Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18185

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18180 and CA264_18185 are separated by 234 nucleotidesCA264_18185 and CA264_18190 are separated by 95 nucleotidesCA264_18190 and CA264_18195 are separated by 16 nucleotides CA264_18180: CA264_18180 - peptidase S41, at 4,227,033 to 4,228,694 _18180 CA264_18185: CA264_18185 - homogentisate 1,2-dioxygenase, at 4,228,929 to 4,230,134 _18185 CA264_18190: CA264_18190 - hypothetical protein, at 4,230,230 to 4,230,757 _18190 CA264_18195: CA264_18195 - chaperonin, at 4,230,774 to 4,231,151 _18195 Position (kb) 4228 4229 4230 4231Strain fitness (log2 ratio) -2 -1 0 1 2at 4228.024 kb on + strand, within CA264_18180at 4228.025 kb on - strand, within CA264_18180at 4228.116 kb on - strand, within CA264_18180at 4228.207 kb on - strand, within CA264_18180at 4228.248 kb on + strand, within CA264_18180at 4228.249 kb on - strand, within CA264_18180at 4228.251 kb on - strand, within CA264_18180at 4228.293 kb on - strand, within CA264_18180at 4228.354 kb on - strand, within CA264_18180at 4228.356 kb on - strand, within CA264_18180at 4228.377 kb on + strand, within CA264_18180at 4228.392 kb on + strand, within CA264_18180at 4228.439 kb on + strand, within CA264_18180at 4228.457 kb on - strand, within CA264_18180at 4228.513 kb on - strand, within CA264_18180at 4228.688 kb on + strandat 4228.689 kb on - strandat 4228.689 kb on - strandat 4228.692 kb on + strandat 4228.693 kb on - strandat 4228.704 kb on - strandat 4228.704 kb on - strandat 4228.750 kb on + strandat 4228.750 kb on + strandat 4228.767 kb on - strandat 4228.770 kb on - strandat 4228.772 kb on + strandat 4228.785 kb on + strandat 4228.786 kb on - strandat 4228.915 kb on - strandat 4228.915 kb on - strandat 4228.921 kb on - strandat 4228.921 kb on - strandat 4228.926 kb on + strandat 4228.926 kb on + strandat 4228.927 kb on - strandat 4228.927 kb on - strandat 4228.938 kb on + strandat 4228.943 kb on + strandat 4228.973 kb on + strandat 4228.973 kb on + strandat 4228.974 kb on - strandat 4229.004 kb on - strandat 4229.059 kb on - strand, within CA264_18185at 4229.059 kb on - strand, within CA264_18185at 4229.171 kb on - strand, within CA264_18185at 4229.230 kb on + strand, within CA264_18185at 4229.231 kb on - strand, within CA264_18185at 4229.231 kb on - strand, within CA264_18185at 4229.231 kb on - strand, within CA264_18185at 4229.271 kb on + strand, within CA264_18185at 4229.272 kb on - strand, within CA264_18185at 4229.274 kb on + strand, within CA264_18185at 4229.274 kb on + strand, within CA264_18185at 4229.274 kb on + strand, within CA264_18185at 4229.275 kb on - strand, within CA264_18185at 4229.278 kb on - strand, within CA264_18185at 4229.373 kb on + strand, within CA264_18185at 4229.625 kb on + strand, within CA264_18185at 4229.625 kb on + strand, within CA264_18185at 4229.626 kb on - strand, within CA264_18185at 4229.626 kb on - strand, within CA264_18185at 4229.626 kb on - strand, within CA264_18185at 4229.679 kb on + strand, within CA264_18185at 4229.679 kb on + strand, within CA264_18185at 4229.680 kb on - strand, within CA264_18185at 4229.680 kb on - strand, within CA264_18185at 4229.693 kb on - strand, within CA264_18185at 4229.865 kb on + strand, within CA264_18185at 4229.866 kb on - strand, within CA264_18185at 4229.868 kb on + strand, within CA264_18185at 4229.885 kb on + strand, within CA264_18185at 4230.000 kb on + strand, within CA264_18185at 4230.001 kb on - strand, within CA264_18185at 4230.073 kb on - strandat 4230.123 kb on - strandat 4230.123 kb on - strandat 4230.152 kb on - strandat 4230.207 kb on + strandat 4230.208 kb on - strandat 4230.216 kb on + strandat 4230.218 kb on + strandat 4230.270 kb on + strandat 4230.361 kb on - strand, within CA264_18190at 4230.523 kb on + strand, within CA264_18190at 4230.524 kb on - strand, within CA264_18190at 4230.532 kb on + strand, within CA264_18190at 4230.533 kb on + strand, within CA264_18190at 4230.534 kb on - strand, within CA264_18190at 4230.595 kb on + strand, within CA264_18190at 4230.598 kb on + strand, within CA264_18190at 4230.641 kb on + strand, within CA264_18190at 4230.642 kb on - strand, within CA264_18190at 4230.659 kb on + strand, within CA264_18190at 4230.659 kb on + strand, within CA264_18190at 4230.660 kb on - strand, within CA264_18190at 4230.709 kb on + strandat 4230.764 kb on + strandat 4230.764 kb on + strandat 4230.764 kb on + strandat 4230.764 kb on + strandat 4230.764 kb on + strandat 4230.765 kb on - strandat 4230.765 kb on - strandat 4230.765 kb on - strandat 4230.769 kb on + strandat 4230.921 kb on + strand, within CA264_18195at 4230.922 kb on - strand, within CA264_18195at 4231.011 kb on + strand, within CA264_18195at 4231.012 kb on - strand, within CA264_18195at 4231.081 kb on - strand, within CA264_18195at 4231.096 kb on - strand, within CA264_18195

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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4,228,024 + CA264_18180 0.60 -0.5
4,228,025 - CA264_18180 0.60 +2.2
4,228,116 - CA264_18180 0.65 -0.4
4,228,207 - CA264_18180 0.71 -0.0
4,228,248 + CA264_18180 0.73 +0.4
4,228,249 - CA264_18180 0.73 +0.1
4,228,251 - CA264_18180 0.73 -0.4
4,228,293 - CA264_18180 0.76 -0.4
4,228,354 - CA264_18180 0.79 -0.1
4,228,356 - CA264_18180 0.80 +0.6
4,228,377 + CA264_18180 0.81 +0.3
4,228,392 + CA264_18180 0.82 +0.2
4,228,439 + CA264_18180 0.85 +0.1
4,228,457 - CA264_18180 0.86 -0.4
4,228,513 - CA264_18180 0.89 +0.2
4,228,688 + -0.6
4,228,689 - -0.9
4,228,689 - -0.3
4,228,692 + -0.1
4,228,693 - -0.3
4,228,704 - -0.6
4,228,704 - +0.9
4,228,750 + +0.6
4,228,750 + -0.7
4,228,767 - +1.7
4,228,770 - -0.6
4,228,772 + +0.4
4,228,785 + +0.4
4,228,786 - +0.2
4,228,915 - -0.1
4,228,915 - -0.9
4,228,921 - -0.7
4,228,921 - -0.2
4,228,926 + +0.4
4,228,926 + -0.5
4,228,927 - -0.2
4,228,927 - +0.0
4,228,938 + -0.2
4,228,943 + -1.1
4,228,973 + -0.2
4,228,973 + -0.8
4,228,974 - -0.2
4,229,004 - +0.0
4,229,059 - CA264_18185 0.11 +0.1
4,229,059 - CA264_18185 0.11 -0.4
4,229,171 - CA264_18185 0.20 +0.3
4,229,230 + CA264_18185 0.25 +1.4
4,229,231 - CA264_18185 0.25 -0.6
4,229,231 - CA264_18185 0.25 -0.5
4,229,231 - CA264_18185 0.25 -0.2
4,229,271 + CA264_18185 0.28 -0.3
4,229,272 - CA264_18185 0.28 +0.0
4,229,274 + CA264_18185 0.29 +0.2
4,229,274 + CA264_18185 0.29 -0.0
4,229,274 + CA264_18185 0.29 +0.1
4,229,275 - CA264_18185 0.29 -0.3
4,229,278 - CA264_18185 0.29 -1.9
4,229,373 + CA264_18185 0.37 -0.1
4,229,625 + CA264_18185 0.58 -0.0
4,229,625 + CA264_18185 0.58 +0.1
4,229,626 - CA264_18185 0.58 -0.0
4,229,626 - CA264_18185 0.58 +0.4
4,229,626 - CA264_18185 0.58 -0.3
4,229,679 + CA264_18185 0.62 -0.7
4,229,679 + CA264_18185 0.62 -0.0
4,229,680 - CA264_18185 0.62 -0.5
4,229,680 - CA264_18185 0.62 +0.7
4,229,693 - CA264_18185 0.63 +0.2
4,229,865 + CA264_18185 0.78 +0.0
4,229,866 - CA264_18185 0.78 +0.0
4,229,868 + CA264_18185 0.78 -0.7
4,229,885 + CA264_18185 0.79 +1.5
4,230,000 + CA264_18185 0.89 -0.3
4,230,001 - CA264_18185 0.89 -0.3
4,230,073 - +0.5
4,230,123 - -0.7
4,230,123 - +0.3
4,230,152 - +0.0
4,230,207 + -1.1
4,230,208 - +1.5
4,230,216 + +0.3
4,230,218 + +0.1
4,230,270 + +0.3
4,230,361 - CA264_18190 0.25 -1.1
4,230,523 + CA264_18190 0.55 +0.0
4,230,524 - CA264_18190 0.56 -1.4
4,230,532 + CA264_18190 0.57 -1.5
4,230,533 + CA264_18190 0.57 -1.4
4,230,534 - CA264_18190 0.58 -1.1
4,230,595 + CA264_18190 0.69 -0.3
4,230,598 + CA264_18190 0.70 -0.1
4,230,641 + CA264_18190 0.78 +1.2
4,230,642 - CA264_18190 0.78 +0.3
4,230,659 + CA264_18190 0.81 +0.4
4,230,659 + CA264_18190 0.81 -0.1
4,230,660 - CA264_18190 0.81 -0.4
4,230,709 + -0.1
4,230,764 + -0.2
4,230,764 + -0.6
4,230,764 + -0.2
4,230,764 + -0.1
4,230,764 + -0.1
4,230,765 - +0.2
4,230,765 - +0.6
4,230,765 - +0.2
4,230,769 + +2.1
4,230,921 + CA264_18195 0.39 -0.7
4,230,922 - CA264_18195 0.39 +1.1
4,231,011 + CA264_18195 0.63 -0.7
4,231,012 - CA264_18195 0.63 -0.3
4,231,081 - CA264_18195 0.81 +0.3
4,231,096 - CA264_18195 0.85 -0.6

Or see this region's nucleotide sequence