Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18170 and CA264_18175 overlap by 4 nucleotides CA264_18175 and CA264_18180 are separated by 235 nucleotides CA264_18180 and CA264_18185 are separated by 234 nucleotides
CA264_18170: CA264_18170 - peptide deformylase, at 4,225,815 to 4,226,384
_18170
CA264_18175: CA264_18175 - Holliday junction resolvase RuvX, at 4,226,381 to 4,226,797
_18175
CA264_18180: CA264_18180 - peptidase S41, at 4,227,033 to 4,228,694
_18180
CA264_18185: CA264_18185 - homogentisate 1,2-dioxygenase, at 4,228,929 to 4,230,134
_18185
Position (kb)
4227
4228
4229 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4226.386 kb on + strand at 4226.386 kb on + strand at 4226.798 kb on - strand at 4226.801 kb on + strand at 4226.801 kb on + strand at 4226.838 kb on - strand at 4226.852 kb on + strand at 4226.940 kb on - strand at 4226.940 kb on - strand at 4226.943 kb on + strand at 4226.943 kb on + strand at 4226.944 kb on - strand at 4226.946 kb on - strand at 4226.946 kb on - strand at 4226.964 kb on + strand at 4226.982 kb on + strand at 4226.983 kb on - strand at 4226.983 kb on - strand at 4226.983 kb on - strand at 4227.032 kb on + strand at 4227.032 kb on + strand at 4227.222 kb on + strand, within CA264_18180 at 4227.223 kb on - strand, within CA264_18180 at 4227.319 kb on - strand, within CA264_18180 at 4227.319 kb on - strand, within CA264_18180 at 4227.386 kb on - strand, within CA264_18180 at 4227.415 kb on - strand, within CA264_18180 at 4227.459 kb on - strand, within CA264_18180 at 4227.461 kb on - strand, within CA264_18180 at 4227.568 kb on + strand, within CA264_18180 at 4227.661 kb on - strand, within CA264_18180 at 4227.661 kb on - strand, within CA264_18180 at 4227.662 kb on + strand, within CA264_18180 at 4227.663 kb on - strand, within CA264_18180 at 4227.672 kb on - strand, within CA264_18180 at 4227.775 kb on + strand, within CA264_18180 at 4227.805 kb on - strand, within CA264_18180 at 4227.889 kb on - strand, within CA264_18180 at 4227.889 kb on - strand, within CA264_18180 at 4228.024 kb on + strand, within CA264_18180 at 4228.025 kb on - strand, within CA264_18180 at 4228.116 kb on - strand, within CA264_18180 at 4228.207 kb on - strand, within CA264_18180 at 4228.248 kb on + strand, within CA264_18180 at 4228.249 kb on - strand, within CA264_18180 at 4228.251 kb on - strand, within CA264_18180 at 4228.293 kb on - strand, within CA264_18180 at 4228.354 kb on - strand, within CA264_18180 at 4228.356 kb on - strand, within CA264_18180 at 4228.377 kb on + strand, within CA264_18180 at 4228.392 kb on + strand, within CA264_18180 at 4228.439 kb on + strand, within CA264_18180 at 4228.457 kb on - strand, within CA264_18180 at 4228.513 kb on - strand, within CA264_18180 at 4228.688 kb on + strand at 4228.689 kb on - strand at 4228.689 kb on - strand at 4228.692 kb on + strand at 4228.693 kb on - strand at 4228.704 kb on - strand at 4228.704 kb on - strand at 4228.750 kb on + strand at 4228.750 kb on + strand at 4228.767 kb on - strand at 4228.770 kb on - strand at 4228.772 kb on + strand at 4228.785 kb on + strand at 4228.786 kb on - strand at 4228.915 kb on - strand at 4228.915 kb on - strand at 4228.921 kb on - strand at 4228.921 kb on - strand at 4228.926 kb on + strand at 4228.926 kb on + strand at 4228.927 kb on - strand at 4228.927 kb on - strand at 4228.938 kb on + strand at 4228.943 kb on + strand at 4228.973 kb on + strand at 4228.973 kb on + strand at 4228.974 kb on - strand at 4229.004 kb on - strand at 4229.059 kb on - strand, within CA264_18185 at 4229.059 kb on - strand, within CA264_18185 at 4229.171 kb on - strand, within CA264_18185 at 4229.230 kb on + strand, within CA264_18185 at 4229.231 kb on - strand, within CA264_18185 at 4229.231 kb on - strand, within CA264_18185 at 4229.231 kb on - strand, within CA264_18185 at 4229.271 kb on + strand, within CA264_18185 at 4229.272 kb on - strand, within CA264_18185 at 4229.274 kb on + strand, within CA264_18185 at 4229.274 kb on + strand, within CA264_18185 at 4229.274 kb on + strand, within CA264_18185 at 4229.275 kb on - strand, within CA264_18185 at 4229.278 kb on - strand, within CA264_18185 at 4229.373 kb on + strand, within CA264_18185 at 4229.625 kb on + strand, within CA264_18185 at 4229.625 kb on + strand, within CA264_18185 at 4229.626 kb on - strand, within CA264_18185 at 4229.626 kb on - strand, within CA264_18185 at 4229.626 kb on - strand, within CA264_18185 at 4229.679 kb on + strand, within CA264_18185 at 4229.679 kb on + strand, within CA264_18185 at 4229.680 kb on - strand, within CA264_18185 at 4229.680 kb on - strand, within CA264_18185 at 4229.693 kb on - strand, within CA264_18185
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 4,226,386 + -1.9 4,226,386 + -1.2 4,226,798 - +0.1 4,226,801 + -0.1 4,226,801 + -1.0 4,226,838 - -0.9 4,226,852 + +0.2 4,226,940 - +0.8 4,226,940 - -0.7 4,226,943 + -0.6 4,226,943 + +2.4 4,226,944 - +0.4 4,226,946 - -0.0 4,226,946 - -0.1 4,226,964 + +0.0 4,226,982 + -0.4 4,226,983 - -1.5 4,226,983 - -0.7 4,226,983 - -0.2 4,227,032 + -0.1 4,227,032 + +0.2 4,227,222 + CA264_18180 0.11 -0.1 4,227,223 - CA264_18180 0.11 -0.3 4,227,319 - CA264_18180 0.17 -0.3 4,227,319 - CA264_18180 0.17 +0.0 4,227,386 - CA264_18180 0.21 +0.2 4,227,415 - CA264_18180 0.23 +0.1 4,227,459 - CA264_18180 0.26 +0.2 4,227,461 - CA264_18180 0.26 +0.4 4,227,568 + CA264_18180 0.32 -0.2 4,227,661 - CA264_18180 0.38 -0.3 4,227,661 - CA264_18180 0.38 -0.0 4,227,662 + CA264_18180 0.38 -0.3 4,227,663 - CA264_18180 0.38 -0.1 4,227,672 - CA264_18180 0.38 +1.3 4,227,775 + CA264_18180 0.45 +0.4 4,227,805 - CA264_18180 0.46 +0.0 4,227,889 - CA264_18180 0.52 -0.3 4,227,889 - CA264_18180 0.52 +0.8 4,228,024 + CA264_18180 0.60 -0.5 4,228,025 - CA264_18180 0.60 +2.2 4,228,116 - CA264_18180 0.65 -0.4 4,228,207 - CA264_18180 0.71 -0.0 4,228,248 + CA264_18180 0.73 +0.4 4,228,249 - CA264_18180 0.73 +0.1 4,228,251 - CA264_18180 0.73 -0.4 4,228,293 - CA264_18180 0.76 -0.4 4,228,354 - CA264_18180 0.79 -0.1 4,228,356 - CA264_18180 0.80 +0.6 4,228,377 + CA264_18180 0.81 +0.3 4,228,392 + CA264_18180 0.82 +0.2 4,228,439 + CA264_18180 0.85 +0.1 4,228,457 - CA264_18180 0.86 -0.4 4,228,513 - CA264_18180 0.89 +0.2 4,228,688 + -0.6 4,228,689 - -0.9 4,228,689 - -0.3 4,228,692 + -0.1 4,228,693 - -0.3 4,228,704 - -0.6 4,228,704 - +0.9 4,228,750 + +0.6 4,228,750 + -0.7 4,228,767 - +1.7 4,228,770 - -0.6 4,228,772 + +0.4 4,228,785 + +0.4 4,228,786 - +0.2 4,228,915 - -0.1 4,228,915 - -0.9 4,228,921 - -0.7 4,228,921 - -0.2 4,228,926 + +0.4 4,228,926 + -0.5 4,228,927 - -0.2 4,228,927 - +0.0 4,228,938 + -0.2 4,228,943 + -1.1 4,228,973 + -0.2 4,228,973 + -0.8 4,228,974 - -0.2 4,229,004 - +0.0 4,229,059 - CA264_18185 0.11 +0.1 4,229,059 - CA264_18185 0.11 -0.4 4,229,171 - CA264_18185 0.20 +0.3 4,229,230 + CA264_18185 0.25 +1.4 4,229,231 - CA264_18185 0.25 -0.6 4,229,231 - CA264_18185 0.25 -0.5 4,229,231 - CA264_18185 0.25 -0.2 4,229,271 + CA264_18185 0.28 -0.3 4,229,272 - CA264_18185 0.28 +0.0 4,229,274 + CA264_18185 0.29 +0.2 4,229,274 + CA264_18185 0.29 -0.0 4,229,274 + CA264_18185 0.29 +0.1 4,229,275 - CA264_18185 0.29 -0.3 4,229,278 - CA264_18185 0.29 -1.9 4,229,373 + CA264_18185 0.37 -0.1 4,229,625 + CA264_18185 0.58 -0.0 4,229,625 + CA264_18185 0.58 +0.1 4,229,626 - CA264_18185 0.58 -0.0 4,229,626 - CA264_18185 0.58 +0.4 4,229,626 - CA264_18185 0.58 -0.3 4,229,679 + CA264_18185 0.62 -0.7 4,229,679 + CA264_18185 0.62 -0.0 4,229,680 - CA264_18185 0.62 -0.5 4,229,680 - CA264_18185 0.62 +0.7 4,229,693 - CA264_18185 0.63 +0.2
Or see this region's nucleotide sequence