Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17625

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17615 and CA264_17620 are separated by 95 nucleotidesCA264_17620 and CA264_17625 are separated by 9 nucleotidesCA264_17625 and CA264_17630 overlap by 17 nucleotidesCA264_17630 and CA264_17635 are separated by 9 nucleotides CA264_17615: CA264_17615 - pantoate--beta-alanine ligase, at 4,103,298 to 4,104,152 _17615 CA264_17620: CA264_17620 - aspartate 1-decarboxylase, at 4,104,248 to 4,104,595 _17620 CA264_17625: CA264_17625 - TIGR00374 family protein, at 4,104,605 to 4,105,651 _17625 CA264_17630: CA264_17630 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 4,105,635 to 4,106,132 _17630 CA264_17635: CA264_17635 - hypothetical protein, at 4,106,142 to 4,106,822 _17635 Position (kb) 4104 4105 4106Strain fitness (log2 ratio) -2 -1 0 1at 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.178 kb on - strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.200 kb on - strandat 4104.200 kb on - strandat 4104.214 kb on + strandat 4104.214 kb on + strandat 4104.218 kb on + strandat 4104.232 kb on - strandat 4104.243 kb on - strandat 4106.119 kb on + strandat 4106.135 kb on + strandat 4106.136 kb on - strandat 4106.154 kb on + strandat 4106.155 kb on - strandat 4106.155 kb on - strandat 4106.159 kb on + strandat 4106.186 kb on + strandat 4106.226 kb on + strand, within CA264_17635at 4106.308 kb on + strand, within CA264_17635at 4106.308 kb on + strand, within CA264_17635at 4106.308 kb on + strand, within CA264_17635at 4106.309 kb on - strand, within CA264_17635at 4106.314 kb on + strand, within CA264_17635at 4106.314 kb on + strand, within CA264_17635at 4106.315 kb on - strand, within CA264_17635at 4106.346 kb on + strand, within CA264_17635at 4106.383 kb on - strand, within CA264_17635at 4106.388 kb on + strand, within CA264_17635at 4106.463 kb on + strand, within CA264_17635at 4106.463 kb on + strand, within CA264_17635at 4106.557 kb on + strand, within CA264_17635at 4106.606 kb on + strand, within CA264_17635

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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4,104,150 + -0.4
4,104,150 + +0.0
4,104,178 - +0.1
4,104,199 + -0.0
4,104,199 + +0.2
4,104,199 + +0.5
4,104,199 + -0.1
4,104,199 + -0.1
4,104,199 + +0.2
4,104,200 - -1.2
4,104,200 - +0.4
4,104,214 + +0.6
4,104,214 + +0.7
4,104,218 + +0.7
4,104,232 - +0.1
4,104,243 - -0.5
4,106,119 + -0.5
4,106,135 + -0.0
4,106,136 - +0.3
4,106,154 + -0.6
4,106,155 - -0.1
4,106,155 - -0.3
4,106,159 + +0.7
4,106,186 + -0.8
4,106,226 + CA264_17635 0.12 -0.6
4,106,308 + CA264_17635 0.24 -0.9
4,106,308 + CA264_17635 0.24 -0.0
4,106,308 + CA264_17635 0.24 -0.2
4,106,309 - CA264_17635 0.25 -0.5
4,106,314 + CA264_17635 0.25 -0.2
4,106,314 + CA264_17635 0.25 +0.9
4,106,315 - CA264_17635 0.25 +0.3
4,106,346 + CA264_17635 0.30 -0.1
4,106,383 - CA264_17635 0.35 +0.1
4,106,388 + CA264_17635 0.36 -0.3
4,106,463 + CA264_17635 0.47 -0.8
4,106,463 + CA264_17635 0.47 -0.1
4,106,557 + CA264_17635 0.61 +0.9
4,106,606 + CA264_17635 0.68 -2.1

Or see this region's nucleotide sequence