Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17020

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17015 and CA264_17020 are separated by 132 nucleotidesCA264_17020 and CA264_17025 are separated by 24 nucleotidesCA264_17025 and CA264_17030 are separated by 265 nucleotides CA264_17015: CA264_17015 - ABC transporter permease, at 3,960,120 to 3,961,343 _17015 CA264_17020: CA264_17020 - methyltransferase type 11, at 3,961,476 to 3,962,285 _17020 CA264_17025: CA264_17025 - ribosome-binding factor A, at 3,962,310 to 3,962,705 _17025 CA264_17030: CA264_17030 - hypothetical protein, at 3,962,971 to 3,964,329 _17030 Position (kb) 3961 3962 3963Strain fitness (log2 ratio) -2 -1 0 1 2at 3961.437 kb on - strandat 3961.442 kb on - strandat 3961.450 kb on + strandat 3961.468 kb on + strandat 3961.469 kb on - strandat 3961.473 kb on + strandat 3961.473 kb on + strandat 3961.474 kb on - strandat 3961.474 kb on - strandat 3961.474 kb on - strandat 3961.474 kb on - strandat 3961.474 kb on - strandat 3961.491 kb on + strandat 3961.554 kb on - strandat 3961.574 kb on - strand, within CA264_17020at 3961.577 kb on - strand, within CA264_17020at 3961.672 kb on + strand, within CA264_17020at 3961.698 kb on - strand, within CA264_17020at 3961.741 kb on + strand, within CA264_17020at 3961.742 kb on - strand, within CA264_17020at 3961.890 kb on + strand, within CA264_17020at 3961.917 kb on + strand, within CA264_17020at 3961.951 kb on - strand, within CA264_17020at 3961.981 kb on + strand, within CA264_17020at 3962.000 kb on + strand, within CA264_17020at 3962.080 kb on + strand, within CA264_17020at 3962.081 kb on - strand, within CA264_17020at 3962.084 kb on - strand, within CA264_17020at 3962.089 kb on + strand, within CA264_17020at 3962.090 kb on - strand, within CA264_17020at 3962.270 kb on + strandat 3962.304 kb on + strandat 3962.312 kb on - strandat 3962.323 kb on + strandat 3962.324 kb on - strandat 3962.724 kb on + strandat 3962.728 kb on - strandat 3962.900 kb on + strandat 3962.900 kb on + strandat 3962.904 kb on + strandat 3962.904 kb on + strandat 3962.904 kb on + strandat 3962.904 kb on + strandat 3962.904 kb on + strandat 3962.905 kb on - strandat 3962.935 kb on - strandat 3962.946 kb on + strandat 3962.951 kb on + strandat 3962.954 kb on + strandat 3962.955 kb on - strandat 3962.955 kb on - strandat 3963.023 kb on + strandat 3963.082 kb on + strandat 3963.103 kb on + strandat 3963.104 kb on - strandat 3963.173 kb on + strand, within CA264_17030at 3963.174 kb on - strand, within CA264_17030at 3963.225 kb on - strand, within CA264_17030at 3963.269 kb on - strand, within CA264_17030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,961,437 - -1.2
3,961,442 - -1.7
3,961,450 + -0.2
3,961,468 + +0.6
3,961,469 - -0.4
3,961,473 + -0.4
3,961,473 + -2.3
3,961,474 - +0.2
3,961,474 - -0.4
3,961,474 - -0.4
3,961,474 - +0.7
3,961,474 - -1.1
3,961,491 + -0.6
3,961,554 - -1.0
3,961,574 - CA264_17020 0.12 +2.0
3,961,577 - CA264_17020 0.12 +1.7
3,961,672 + CA264_17020 0.24 -1.4
3,961,698 - CA264_17020 0.27 -1.1
3,961,741 + CA264_17020 0.33 -1.2
3,961,742 - CA264_17020 0.33 +0.3
3,961,890 + CA264_17020 0.51 -1.0
3,961,917 + CA264_17020 0.54 -0.6
3,961,951 - CA264_17020 0.59 -0.5
3,961,981 + CA264_17020 0.62 +0.1
3,962,000 + CA264_17020 0.65 +0.4
3,962,080 + CA264_17020 0.75 -0.4
3,962,081 - CA264_17020 0.75 -2.1
3,962,084 - CA264_17020 0.75 -1.0
3,962,089 + CA264_17020 0.76 -1.9
3,962,090 - CA264_17020 0.76 -1.6
3,962,270 + +0.7
3,962,304 + +0.2
3,962,312 - +0.9
3,962,323 + +2.1
3,962,324 - -0.5
3,962,724 + -2.2
3,962,728 - -0.7
3,962,900 + -0.2
3,962,900 + -0.6
3,962,904 + -0.9
3,962,904 + -0.1
3,962,904 + +0.5
3,962,904 + -0.4
3,962,904 + -0.6
3,962,905 - +1.1
3,962,935 - -0.1
3,962,946 + -0.3
3,962,951 + -0.9
3,962,954 + -0.6
3,962,955 - -0.6
3,962,955 - -1.0
3,963,023 + +0.1
3,963,082 + -0.7
3,963,103 + -1.6
3,963,104 - -1.2
3,963,173 + CA264_17030 0.15 -1.2
3,963,174 - CA264_17030 0.15 -1.0
3,963,225 - CA264_17030 0.19 +2.0
3,963,269 - CA264_17030 0.22 -1.0

Or see this region's nucleotide sequence