Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15180

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15170 and CA264_15175 are separated by 19 nucleotidesCA264_15175 and CA264_15180 are separated by 3 nucleotidesCA264_15180 and CA264_15185 are separated by 194 nucleotides CA264_15170: CA264_15170 - biopolymer transporter ExbD, at 3,556,180 to 3,556,785 _15170 CA264_15175: CA264_15175 - biopolymer transporter ExbD, at 3,556,805 to 3,557,329 _15175 CA264_15180: CA264_15180 - energy transducer TonB, at 3,557,333 to 3,558,163 _15180 CA264_15185: CA264_15185 - hypothetical protein, at 3,558,358 to 3,559,194 _15185 Position (kb) 3557 3558 3559Strain fitness (log2 ratio) -2 -1 0 1 2at 3556.380 kb on + strand, within CA264_15170at 3556.427 kb on + strand, within CA264_15170at 3556.597 kb on - strand, within CA264_15170at 3556.626 kb on - strand, within CA264_15170at 3556.783 kb on + strandat 3556.784 kb on - strandat 3556.804 kb on - strandat 3557.069 kb on + strand, within CA264_15175at 3557.235 kb on + strand, within CA264_15175at 3557.344 kb on + strandat 3557.408 kb on + strandat 3557.660 kb on - strand, within CA264_15180at 3557.838 kb on + strand, within CA264_15180at 3557.857 kb on + strand, within CA264_15180at 3557.857 kb on + strand, within CA264_15180at 3557.861 kb on + strand, within CA264_15180at 3557.977 kb on - strand, within CA264_15180at 3558.161 kb on + strandat 3558.247 kb on + strandat 3558.250 kb on + strandat 3558.251 kb on - strandat 3558.251 kb on - strandat 3558.255 kb on - strandat 3558.327 kb on + strandat 3558.373 kb on + strandat 3558.377 kb on + strandat 3558.452 kb on - strand, within CA264_15185at 3558.462 kb on + strand, within CA264_15185at 3558.493 kb on - strand, within CA264_15185at 3558.556 kb on + strand, within CA264_15185at 3558.571 kb on + strand, within CA264_15185at 3558.571 kb on + strand, within CA264_15185at 3558.571 kb on + strand, within CA264_15185at 3558.571 kb on + strand, within CA264_15185at 3558.572 kb on - strand, within CA264_15185at 3558.572 kb on - strand, within CA264_15185at 3558.590 kb on - strand, within CA264_15185at 3558.606 kb on + strand, within CA264_15185at 3558.892 kb on + strand, within CA264_15185at 3558.892 kb on + strand, within CA264_15185at 3558.892 kb on + strand, within CA264_15185at 3558.893 kb on - strand, within CA264_15185

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,556,380 + CA264_15170 0.33 +0.9
3,556,427 + CA264_15170 0.41 +0.1
3,556,597 - CA264_15170 0.69 +0.3
3,556,626 - CA264_15170 0.74 +1.2
3,556,783 + -0.3
3,556,784 - +1.6
3,556,804 - -0.9
3,557,069 + CA264_15175 0.50 -0.6
3,557,235 + CA264_15175 0.82 -0.2
3,557,344 + -0.6
3,557,408 + -1.1
3,557,660 - CA264_15180 0.39 -0.2
3,557,838 + CA264_15180 0.61 +0.4
3,557,857 + CA264_15180 0.63 -0.7
3,557,857 + CA264_15180 0.63 -1.8
3,557,861 + CA264_15180 0.64 -1.1
3,557,977 - CA264_15180 0.77 -0.2
3,558,161 + +0.1
3,558,247 + +0.7
3,558,250 + +1.1
3,558,251 - +0.9
3,558,251 - +1.0
3,558,255 - -0.1
3,558,327 + +2.2
3,558,373 + +0.2
3,558,377 + -0.4
3,558,452 - CA264_15185 0.11 -0.8
3,558,462 + CA264_15185 0.12 +0.5
3,558,493 - CA264_15185 0.16 +0.3
3,558,556 + CA264_15185 0.24 +1.3
3,558,571 + CA264_15185 0.25 +0.8
3,558,571 + CA264_15185 0.25 +0.2
3,558,571 + CA264_15185 0.25 -0.1
3,558,571 + CA264_15185 0.25 -2.3
3,558,572 - CA264_15185 0.26 -0.7
3,558,572 - CA264_15185 0.26 -0.0
3,558,590 - CA264_15185 0.28 +0.3
3,558,606 + CA264_15185 0.30 -1.6
3,558,892 + CA264_15185 0.64 -1.1
3,558,892 + CA264_15185 0.64 +0.3
3,558,892 + CA264_15185 0.64 -0.7
3,558,893 - CA264_15185 0.64 -0.5

Or see this region's nucleotide sequence