Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09240 and CA264_09245 are separated by 16 nucleotides CA264_09245 and CA264_09250 are separated by 38 nucleotides CA264_09250 and CA264_09255 are separated by 85 nucleotides
CA264_09240: CA264_09240 - aldehyde dehydrogenase, at 2,161,721 to 2,163,148
_09240
CA264_09245: CA264_09245 - hypothetical protein, at 2,163,165 to 2,163,536
_09245
CA264_09250: CA264_09250 - hemolysin, at 2,163,575 to 2,164,624
_09250
CA264_09255: CA264_09255 - isocitrate lyase, at 2,164,710 to 2,165,990
_09255
Position (kb)
2163
2164
2165 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2162.801 kb on - strand, within CA264_09240 at 2162.882 kb on - strand, within CA264_09240 at 2162.904 kb on + strand, within CA264_09240 at 2162.905 kb on - strand, within CA264_09240 at 2162.909 kb on + strand, within CA264_09240 at 2162.910 kb on - strand, within CA264_09240 at 2162.957 kb on - strand, within CA264_09240 at 2162.959 kb on - strand, within CA264_09240 at 2162.959 kb on - strand, within CA264_09240 at 2162.986 kb on - strand, within CA264_09240 at 2163.136 kb on + strand at 2163.234 kb on - strand, within CA264_09245 at 2163.293 kb on + strand, within CA264_09245 at 2163.394 kb on + strand, within CA264_09245 at 2163.401 kb on + strand, within CA264_09245 at 2163.403 kb on - strand, within CA264_09245 at 2163.509 kb on - strand at 2163.509 kb on - strand at 2163.538 kb on + strand at 2163.545 kb on + strand at 2163.546 kb on - strand at 2163.682 kb on + strand, within CA264_09250 at 2163.724 kb on + strand, within CA264_09250 at 2163.725 kb on - strand, within CA264_09250 at 2163.736 kb on - strand, within CA264_09250 at 2163.736 kb on - strand, within CA264_09250 at 2163.757 kb on - strand, within CA264_09250 at 2163.760 kb on + strand, within CA264_09250 at 2163.760 kb on + strand, within CA264_09250 at 2163.769 kb on + strand, within CA264_09250 at 2163.836 kb on + strand, within CA264_09250 at 2163.941 kb on - strand, within CA264_09250 at 2163.941 kb on - strand, within CA264_09250 at 2163.968 kb on + strand, within CA264_09250 at 2163.969 kb on - strand, within CA264_09250 at 2164.097 kb on - strand, within CA264_09250 at 2164.133 kb on - strand, within CA264_09250 at 2164.299 kb on - strand, within CA264_09250 at 2164.300 kb on + strand, within CA264_09250 at 2164.377 kb on + strand, within CA264_09250 at 2164.378 kb on - strand, within CA264_09250 at 2164.378 kb on - strand, within CA264_09250 at 2164.610 kb on + strand at 2164.622 kb on + strand at 2164.645 kb on + strand at 2164.645 kb on + strand at 2164.645 kb on + strand at 2164.646 kb on - strand at 2164.646 kb on - strand at 2164.674 kb on - strand at 2164.674 kb on - strand at 2164.678 kb on + strand at 2164.678 kb on + strand at 2164.679 kb on - strand at 2164.692 kb on + strand at 2164.701 kb on + strand at 2164.702 kb on - strand at 2164.702 kb on - strand at 2164.704 kb on + strand at 2164.704 kb on + strand at 2164.711 kb on + strand at 2164.733 kb on + strand at 2164.740 kb on + strand at 2164.741 kb on - strand at 2164.741 kb on - strand at 2165.028 kb on + strand, within CA264_09255 at 2165.029 kb on - strand, within CA264_09255 at 2165.033 kb on + strand, within CA264_09255 at 2165.046 kb on - strand, within CA264_09255 at 2165.064 kb on - strand, within CA264_09255 at 2165.097 kb on + strand, within CA264_09255 at 2165.176 kb on + strand, within CA264_09255 at 2165.176 kb on + strand, within CA264_09255 at 2165.257 kb on - strand, within CA264_09255 at 2165.259 kb on - strand, within CA264_09255 at 2165.466 kb on + strand, within CA264_09255 at 2165.523 kb on - strand, within CA264_09255 at 2165.566 kb on + strand, within CA264_09255 at 2165.567 kb on - strand, within CA264_09255 at 2165.567 kb on - strand, within CA264_09255 at 2165.598 kb on + strand, within CA264_09255 at 2165.598 kb on + strand, within CA264_09255 at 2165.599 kb on - strand, within CA264_09255 at 2165.599 kb on - strand, within CA264_09255
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 2,162,801 - CA264_09240 0.76 -0.4 2,162,882 - CA264_09240 0.81 -1.0 2,162,904 + CA264_09240 0.83 -0.8 2,162,905 - CA264_09240 0.83 +0.1 2,162,909 + CA264_09240 0.83 -1.0 2,162,910 - CA264_09240 0.83 -1.0 2,162,957 - CA264_09240 0.87 -1.0 2,162,959 - CA264_09240 0.87 -0.1 2,162,959 - CA264_09240 0.87 -2.4 2,162,986 - CA264_09240 0.89 -0.2 2,163,136 + +1.1 2,163,234 - CA264_09245 0.19 -0.0 2,163,293 + CA264_09245 0.34 +1.6 2,163,394 + CA264_09245 0.62 -0.3 2,163,401 + CA264_09245 0.63 -0.4 2,163,403 - CA264_09245 0.64 -0.5 2,163,509 - -0.1 2,163,509 - -0.4 2,163,538 + -0.0 2,163,545 + -0.5 2,163,546 - -0.4 2,163,682 + CA264_09250 0.10 -0.3 2,163,724 + CA264_09250 0.14 +0.1 2,163,725 - CA264_09250 0.14 +0.1 2,163,736 - CA264_09250 0.15 -0.2 2,163,736 - CA264_09250 0.15 -0.2 2,163,757 - CA264_09250 0.17 +0.4 2,163,760 + CA264_09250 0.18 -0.1 2,163,760 + CA264_09250 0.18 +2.0 2,163,769 + CA264_09250 0.18 +0.2 2,163,836 + CA264_09250 0.25 -0.1 2,163,941 - CA264_09250 0.35 -0.4 2,163,941 - CA264_09250 0.35 -0.7 2,163,968 + CA264_09250 0.37 -0.4 2,163,969 - CA264_09250 0.38 -0.5 2,164,097 - CA264_09250 0.50 -0.2 2,164,133 - CA264_09250 0.53 +1.1 2,164,299 - CA264_09250 0.69 +0.4 2,164,300 + CA264_09250 0.69 +0.1 2,164,377 + CA264_09250 0.76 +0.7 2,164,378 - CA264_09250 0.76 -0.9 2,164,378 - CA264_09250 0.76 -1.0 2,164,610 + -1.1 2,164,622 + -0.1 2,164,645 + -0.2 2,164,645 + -0.4 2,164,645 + -0.1 2,164,646 - -0.2 2,164,646 - -0.4 2,164,674 - +0.3 2,164,674 - -0.1 2,164,678 + +0.8 2,164,678 + -1.3 2,164,679 - -0.5 2,164,692 + -1.0 2,164,701 + +0.4 2,164,702 - +0.5 2,164,702 - -0.6 2,164,704 + -0.9 2,164,704 + -0.7 2,164,711 + -0.2 2,164,733 + -0.2 2,164,740 + +0.4 2,164,741 - +0.2 2,164,741 - +2.0 2,165,028 + CA264_09255 0.25 -0.4 2,165,029 - CA264_09255 0.25 -0.7 2,165,033 + CA264_09255 0.25 -0.1 2,165,046 - CA264_09255 0.26 -1.0 2,165,064 - CA264_09255 0.28 -0.9 2,165,097 + CA264_09255 0.30 +0.8 2,165,176 + CA264_09255 0.36 -0.4 2,165,176 + CA264_09255 0.36 -0.1 2,165,257 - CA264_09255 0.43 -2.2 2,165,259 - CA264_09255 0.43 +0.3 2,165,466 + CA264_09255 0.59 -1.0 2,165,523 - CA264_09255 0.63 -1.5 2,165,566 + CA264_09255 0.67 +1.0 2,165,567 - CA264_09255 0.67 -0.3 2,165,567 - CA264_09255 0.67 +0.3 2,165,598 + CA264_09255 0.69 -1.0 2,165,598 + CA264_09255 0.69 -1.0 2,165,599 - CA264_09255 0.69 -0.9 2,165,599 - CA264_09255 0.69 +0.4
Or see this region's nucleotide sequence