Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06505

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06500 and CA264_06505 are separated by 53 nucleotidesCA264_06505 and CA264_06510 are separated by 152 nucleotides CA264_06500: CA264_06500 - peptidase M48, at 1,501,702 to 1,502,535 _06500 CA264_06505: CA264_06505 - hypothetical protein, at 1,502,589 to 1,503,731 _06505 CA264_06510: CA264_06510 - trehalose synthase, at 1,503,884 to 1,505,533 _06510 Position (kb) 1502 1503 1504Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1501.628 kb on - strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.631 kb on + strandat 1501.651 kb on + strandat 1501.652 kb on - strandat 1501.811 kb on + strand, within CA264_06500at 1501.811 kb on + strand, within CA264_06500at 1501.811 kb on + strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.812 kb on - strand, within CA264_06500at 1501.930 kb on - strand, within CA264_06500at 1501.930 kb on - strand, within CA264_06500at 1501.933 kb on - strand, within CA264_06500at 1501.933 kb on - strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.934 kb on + strand, within CA264_06500at 1501.946 kb on + strand, within CA264_06500at 1501.947 kb on - strand, within CA264_06500at 1501.966 kb on + strand, within CA264_06500at 1501.967 kb on - strand, within CA264_06500at 1501.967 kb on - strand, within CA264_06500at 1501.968 kb on + strand, within CA264_06500at 1502.051 kb on - strand, within CA264_06500at 1502.106 kb on - strand, within CA264_06500at 1502.148 kb on - strand, within CA264_06500at 1502.156 kb on + strand, within CA264_06500at 1502.269 kb on - strand, within CA264_06500at 1502.329 kb on + strand, within CA264_06500at 1502.329 kb on + strand, within CA264_06500at 1502.330 kb on - strand, within CA264_06500at 1502.330 kb on - strand, within CA264_06500at 1502.332 kb on + strand, within CA264_06500at 1502.361 kb on + strand, within CA264_06500at 1502.448 kb on - strand, within CA264_06500at 1502.448 kb on - strand, within CA264_06500at 1502.623 kb on + strandat 1502.624 kb on - strandat 1502.627 kb on + strandat 1502.627 kb on + strandat 1502.628 kb on - strandat 1502.766 kb on - strand, within CA264_06505at 1502.823 kb on + strand, within CA264_06505at 1502.824 kb on - strand, within CA264_06505at 1502.824 kb on - strand, within CA264_06505at 1502.824 kb on - strand, within CA264_06505at 1502.963 kb on + strand, within CA264_06505at 1502.964 kb on - strand, within CA264_06505at 1502.984 kb on - strand, within CA264_06505at 1503.069 kb on + strand, within CA264_06505at 1503.070 kb on - strand, within CA264_06505at 1503.145 kb on + strand, within CA264_06505at 1503.146 kb on - strand, within CA264_06505at 1503.250 kb on - strand, within CA264_06505at 1503.283 kb on + strand, within CA264_06505at 1503.284 kb on - strand, within CA264_06505at 1503.284 kb on - strand, within CA264_06505at 1503.284 kb on - strand, within CA264_06505at 1503.288 kb on + strand, within CA264_06505at 1503.312 kb on - strand, within CA264_06505at 1503.393 kb on + strand, within CA264_06505at 1503.393 kb on + strand, within CA264_06505at 1503.394 kb on - strand, within CA264_06505at 1503.396 kb on - strand, within CA264_06505at 1503.435 kb on - strand, within CA264_06505at 1503.526 kb on - strand, within CA264_06505at 1503.526 kb on - strand, within CA264_06505at 1503.605 kb on - strand, within CA264_06505at 1503.665 kb on + strandat 1503.667 kb on + strandat 1503.734 kb on + strandat 1503.734 kb on + strandat 1503.735 kb on - strandat 1503.811 kb on + strandat 1503.812 kb on - strandat 1503.818 kb on - strandat 1503.831 kb on + strandat 1503.831 kb on + strandat 1503.842 kb on + strandat 1503.868 kb on - strandat 1503.897 kb on + strandat 1503.897 kb on + strandat 1503.898 kb on - strandat 1503.898 kb on - strandat 1503.917 kb on - strandat 1503.917 kb on - strandat 1503.921 kb on - strandat 1504.002 kb on - strandat 1504.025 kb on - strandat 1504.078 kb on + strand, within CA264_06510at 1504.088 kb on + strand, within CA264_06510at 1504.088 kb on + strand, within CA264_06510at 1504.092 kb on - strand, within CA264_06510at 1504.166 kb on - strand, within CA264_06510at 1504.188 kb on + strand, within CA264_06510at 1504.188 kb on + strand, within CA264_06510at 1504.189 kb on - strand, within CA264_06510at 1504.189 kb on - strandat 1504.195 kb on + strand, within CA264_06510at 1504.196 kb on - strand, within CA264_06510at 1504.196 kb on - strand, within CA264_06510at 1504.262 kb on + strand, within CA264_06510at 1504.330 kb on + strand, within CA264_06510at 1504.340 kb on + strand, within CA264_06510at 1504.341 kb on - strand, within CA264_06510at 1504.361 kb on + strand, within CA264_06510at 1504.364 kb on + strand, within CA264_06510at 1504.379 kb on + strand, within CA264_06510at 1504.688 kb on + strand, within CA264_06510at 1504.689 kb on - strand, within CA264_06510at 1504.701 kb on - strand, within CA264_06510at 1504.701 kb on - strand, within CA264_06510at 1504.701 kb on - strand, within CA264_06510at 1504.701 kb on - strand, within CA264_06510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,501,628 - -1.0
1,501,631 + -0.4
1,501,631 + -0.6
1,501,631 + +0.5
1,501,631 + -0.4
1,501,651 + -0.5
1,501,652 - -0.3
1,501,811 + CA264_06500 0.13 -0.4
1,501,811 + CA264_06500 0.13 -0.5
1,501,811 + CA264_06500 0.13 +0.6
1,501,812 - CA264_06500 0.13 -0.9
1,501,812 - CA264_06500 0.13 -0.7
1,501,812 - CA264_06500 0.13 +0.0
1,501,812 - CA264_06500 0.13 +0.0
1,501,930 - CA264_06500 0.27 +0.5
1,501,930 - CA264_06500 0.27 -0.2
1,501,933 - CA264_06500 0.28 +0.0
1,501,933 - CA264_06500 0.28 -1.9
1,501,934 + CA264_06500 0.28 -1.6
1,501,934 + CA264_06500 0.28 +1.4
1,501,934 + CA264_06500 0.28 +0.1
1,501,946 + CA264_06500 0.29 +0.9
1,501,947 - CA264_06500 0.29 -0.1
1,501,966 + CA264_06500 0.32 +3.1
1,501,967 - CA264_06500 0.32 +0.4
1,501,967 - CA264_06500 0.32 -0.6
1,501,968 + CA264_06500 0.32 +0.4
1,502,051 - CA264_06500 0.42 -0.1
1,502,106 - CA264_06500 0.48 -0.8
1,502,148 - CA264_06500 0.53 -1.2
1,502,156 + CA264_06500 0.54 -1.3
1,502,269 - CA264_06500 0.68 +0.0
1,502,329 + CA264_06500 0.75 -0.2
1,502,329 + CA264_06500 0.75 +0.0
1,502,330 - CA264_06500 0.75 +0.5
1,502,330 - CA264_06500 0.75 +0.1
1,502,332 + CA264_06500 0.76 +0.2
1,502,361 + CA264_06500 0.79 +0.4
1,502,448 - CA264_06500 0.89 +0.9
1,502,448 - CA264_06500 0.89 -0.2
1,502,623 + +0.1
1,502,624 - +0.3
1,502,627 + -0.6
1,502,627 + +0.3
1,502,628 - +2.4
1,502,766 - CA264_06505 0.15 +0.4
1,502,823 + CA264_06505 0.20 +0.0
1,502,824 - CA264_06505 0.21 +0.4
1,502,824 - CA264_06505 0.21 +0.6
1,502,824 - CA264_06505 0.21 -1.3
1,502,963 + CA264_06505 0.33 -0.6
1,502,964 - CA264_06505 0.33 -0.6
1,502,984 - CA264_06505 0.35 +0.2
1,503,069 + CA264_06505 0.42 +1.0
1,503,070 - CA264_06505 0.42 +0.0
1,503,145 + CA264_06505 0.49 -1.5
1,503,146 - CA264_06505 0.49 +0.5
1,503,250 - CA264_06505 0.58 -0.1
1,503,283 + CA264_06505 0.61 +0.1
1,503,284 - CA264_06505 0.61 +0.6
1,503,284 - CA264_06505 0.61 +0.8
1,503,284 - CA264_06505 0.61 -1.7
1,503,288 + CA264_06505 0.61 -0.9
1,503,312 - CA264_06505 0.63 -1.1
1,503,393 + CA264_06505 0.70 -0.3
1,503,393 + CA264_06505 0.70 +0.8
1,503,394 - CA264_06505 0.70 +0.7
1,503,396 - CA264_06505 0.71 -0.1
1,503,435 - CA264_06505 0.74 +0.8
1,503,526 - CA264_06505 0.82 +0.8
1,503,526 - CA264_06505 0.82 +0.0
1,503,605 - CA264_06505 0.89 +0.2
1,503,665 + -1.8
1,503,667 + -0.0
1,503,734 + -0.2
1,503,734 + -0.8
1,503,735 - -0.5
1,503,811 + -0.1
1,503,812 - -0.8
1,503,818 - -0.7
1,503,831 + +1.3
1,503,831 + +0.9
1,503,842 + -0.4
1,503,868 - -0.1
1,503,897 + +1.6
1,503,897 + -0.9
1,503,898 - -0.4
1,503,898 - -0.2
1,503,917 - +0.6
1,503,917 - -0.5
1,503,921 - -2.0
1,504,002 - +0.1
1,504,025 - +0.2
1,504,078 + CA264_06510 0.12 -0.1
1,504,088 + CA264_06510 0.12 +0.3
1,504,088 + CA264_06510 0.12 +0.6
1,504,092 - CA264_06510 0.13 +0.8
1,504,166 - CA264_06510 0.17 -0.5
1,504,188 + CA264_06510 0.18 +0.2
1,504,188 + CA264_06510 0.18 +0.5
1,504,189 - CA264_06510 0.18 -0.0
1,504,189 - +0.3
1,504,195 + CA264_06510 0.19 +0.6
1,504,196 - CA264_06510 0.19 +1.1
1,504,196 - CA264_06510 0.19 +0.2
1,504,262 + CA264_06510 0.23 -0.5
1,504,330 + CA264_06510 0.27 -0.5
1,504,340 + CA264_06510 0.28 +0.7
1,504,341 - CA264_06510 0.28 -0.2
1,504,361 + CA264_06510 0.29 -0.1
1,504,364 + CA264_06510 0.29 -0.4
1,504,379 + CA264_06510 0.30 -0.4
1,504,688 + CA264_06510 0.49 -1.7
1,504,689 - CA264_06510 0.49 -0.8
1,504,701 - CA264_06510 0.50 -0.2
1,504,701 - CA264_06510 0.50 -0.5
1,504,701 - CA264_06510 0.50 +0.4
1,504,701 - CA264_06510 0.50 +0.2

Or see this region's nucleotide sequence