Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00315

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00310 and CA264_00315 are separated by 67 nucleotidesCA264_00315 and CA264_00320 are separated by 528 nucleotides CA264_00310: CA264_00310 - magnesium chelatase, at 72,237 to 73,754 _00310 CA264_00315: CA264_00315 - hypothetical protein, at 73,822 to 74,112 _00315 CA264_00320: CA264_00320 - hypothetical protein, at 74,641 to 75,291 _00320 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2at 72.838 kb on + strand, within CA264_00310at 72.948 kb on + strand, within CA264_00310at 72.951 kb on - strand, within CA264_00310at 72.981 kb on - strand, within CA264_00310at 73.020 kb on - strand, within CA264_00310at 73.294 kb on + strand, within CA264_00310at 73.294 kb on + strand, within CA264_00310at 73.295 kb on - strand, within CA264_00310at 73.310 kb on + strand, within CA264_00310at 73.310 kb on + strand, within CA264_00310at 73.311 kb on - strand, within CA264_00310at 73.315 kb on + strand, within CA264_00310at 73.316 kb on - strand, within CA264_00310at 73.316 kb on - strand, within CA264_00310at 73.321 kb on + strand, within CA264_00310at 73.322 kb on - strand, within CA264_00310at 73.322 kb on - strand, within CA264_00310at 73.326 kb on + strand, within CA264_00310at 73.326 kb on + strand, within CA264_00310at 73.327 kb on - strand, within CA264_00310at 73.327 kb on - strand, within CA264_00310at 73.327 kb on - strand, within CA264_00310at 73.404 kb on + strand, within CA264_00310at 73.405 kb on - strand, within CA264_00310at 73.452 kb on + strand, within CA264_00310at 73.524 kb on + strand, within CA264_00310at 73.527 kb on - strand, within CA264_00310at 73.749 kb on + strandat 73.749 kb on + strandat 73.750 kb on - strandat 73.776 kb on - strandat 73.776 kb on - strandat 73.778 kb on - strandat 73.778 kb on - strandat 73.802 kb on - strandat 73.804 kb on + strandat 73.805 kb on - strandat 73.805 kb on - strandat 73.950 kb on - strand, within CA264_00315at 73.950 kb on - strand, within CA264_00315at 73.957 kb on + strand, within CA264_00315at 74.049 kb on - strand, within CA264_00315at 74.106 kb on - strandat 74.106 kb on - strandat 74.125 kb on + strandat 74.125 kb on + strandat 74.126 kb on - strandat 74.138 kb on + strandat 74.139 kb on - strandat 74.139 kb on - strandat 74.139 kb on - strandat 74.190 kb on - strandat 74.190 kb on - strandat 74.192 kb on - strandat 74.197 kb on + strandat 74.231 kb on + strandat 74.232 kb on - strandat 74.234 kb on - strandat 74.260 kb on - strandat 74.262 kb on + strandat 74.262 kb on + strandat 74.262 kb on + strandat 74.262 kb on + strandat 74.262 kb on + strandat 74.267 kb on + strandat 74.267 kb on + strandat 74.268 kb on - strandat 74.270 kb on - strandat 74.337 kb on + strandat 74.338 kb on - strandat 74.405 kb on + strandat 74.461 kb on + strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.505 kb on + strandat 74.723 kb on + strand, within CA264_00320at 74.723 kb on + strand, within CA264_00320at 74.780 kb on - strand, within CA264_00320at 74.862 kb on - strand, within CA264_00320at 74.957 kb on + strand, within CA264_00320at 74.958 kb on - strand, within CA264_00320at 74.961 kb on + strand, within CA264_00320at 74.962 kb on - strand, within CA264_00320at 75.041 kb on + strand, within CA264_00320at 75.086 kb on - strand, within CA264_00320at 75.107 kb on + strand, within CA264_00320at 75.108 kb on - strand, within CA264_00320at 75.108 kb on - strand, within CA264_00320

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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72,838 + CA264_00310 0.40 -0.1
72,948 + CA264_00310 0.47 +0.7
72,951 - CA264_00310 0.47 -0.4
72,981 - CA264_00310 0.49 +0.7
73,020 - CA264_00310 0.52 -0.3
73,294 + CA264_00310 0.70 +1.7
73,294 + CA264_00310 0.70 -0.0
73,295 - CA264_00310 0.70 +1.9
73,310 + CA264_00310 0.71 +0.0
73,310 + CA264_00310 0.71 -2.6
73,311 - CA264_00310 0.71 -0.0
73,315 + CA264_00310 0.71 -0.2
73,316 - CA264_00310 0.71 +0.5
73,316 - CA264_00310 0.71 -0.5
73,321 + CA264_00310 0.71 -2.2
73,322 - CA264_00310 0.71 -0.3
73,322 - CA264_00310 0.71 -0.5
73,326 + CA264_00310 0.72 -0.5
73,326 + CA264_00310 0.72 +0.2
73,327 - CA264_00310 0.72 +0.2
73,327 - CA264_00310 0.72 -1.1
73,327 - CA264_00310 0.72 +0.6
73,404 + CA264_00310 0.77 -1.6
73,405 - CA264_00310 0.77 -0.2
73,452 + CA264_00310 0.80 +0.1
73,524 + CA264_00310 0.85 -0.5
73,527 - CA264_00310 0.85 +0.1
73,749 + -0.1
73,749 + -0.3
73,750 - -1.2
73,776 - -0.5
73,776 - -0.1
73,778 - +0.4
73,778 - +0.4
73,802 - +0.3
73,804 + +0.1
73,805 - +0.2
73,805 - -0.4
73,950 - CA264_00315 0.44 -0.6
73,950 - CA264_00315 0.44 -0.4
73,957 + CA264_00315 0.46 -1.0
74,049 - CA264_00315 0.78 -1.8
74,106 - -0.8
74,106 - +0.6
74,125 + +0.8
74,125 + -0.7
74,126 - -1.9
74,138 + -1.0
74,139 - -0.2
74,139 - -0.2
74,139 - +1.0
74,190 - -1.0
74,190 - +0.1
74,192 - +0.1
74,197 + +0.4
74,231 + +0.2
74,232 - -0.5
74,234 - -0.1
74,260 - +0.1
74,262 + -0.5
74,262 + -0.0
74,262 + +0.0
74,262 + -0.8
74,262 + -0.0
74,267 + -0.5
74,267 + -0.7
74,268 - +0.6
74,270 - -0.8
74,337 + -0.2
74,338 - -0.2
74,405 + -0.1
74,461 + -0.1
74,462 - +1.4
74,462 - +0.5
74,505 + -0.1
74,723 + CA264_00320 0.13 +0.2
74,723 + CA264_00320 0.13 +0.2
74,780 - CA264_00320 0.21 +0.6
74,862 - CA264_00320 0.34 +0.2
74,957 + CA264_00320 0.49 +0.2
74,958 - CA264_00320 0.49 -0.6
74,961 + CA264_00320 0.49 -0.2
74,962 - CA264_00320 0.49 -0.7
75,041 + CA264_00320 0.61 +0.8
75,086 - CA264_00320 0.68 -1.2
75,107 + CA264_00320 0.72 -2.3
75,108 - CA264_00320 0.72 -0.1
75,108 - CA264_00320 0.72 -0.7

Or see this region's nucleotide sequence