Strain Fitness in Bosea sp. OAE506 around ABIE41_RS24210

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS24205 and ABIE41_RS24210 are separated by 225 nucleotidesABIE41_RS24210 and ABIE41_RS24215 are separated by 15 nucleotides ABIE41_RS24205: ABIE41_RS24205 - short-chain dehydrogenase/reductase, at 4,999,924 to 5,000,691 _RS24205 ABIE41_RS24210: ABIE41_RS24210 - K(+)-transporting ATPase subunit F, at 5,000,917 to 5,001,006 _RS24210 ABIE41_RS24215: ABIE41_RS24215 - potassium-transporting ATPase subunit KdpA, at 5,001,022 to 5,002,713 _RS24215 Position (kb) 5000 5001 5002Strain fitness (log2 ratio) -3 -2 -1 0 1at 5000.263 kb on + strand, within ABIE41_RS24205at 5000.263 kb on + strand, within ABIE41_RS24205at 5000.263 kb on + strand, within ABIE41_RS24205at 5000.263 kb on + strand, within ABIE41_RS24205at 5000.263 kb on + strand, within ABIE41_RS24205at 5000.264 kb on - strand, within ABIE41_RS24205at 5000.264 kb on - strand, within ABIE41_RS24205at 5000.264 kb on - strand, within ABIE41_RS24205at 5000.264 kb on - strand, within ABIE41_RS24205at 5000.264 kb on - strand, within ABIE41_RS24205at 5000.264 kb on - strand, within ABIE41_RS24205at 5000.265 kb on + strand, within ABIE41_RS24205at 5000.265 kb on + strand, within ABIE41_RS24205at 5000.266 kb on - strand, within ABIE41_RS24205at 5000.266 kb on - strand, within ABIE41_RS24205at 5000.266 kb on - strand, within ABIE41_RS24205at 5000.268 kb on - strand, within ABIE41_RS24205at 5000.284 kb on + strand, within ABIE41_RS24205at 5000.285 kb on - strand, within ABIE41_RS24205at 5000.365 kb on + strand, within ABIE41_RS24205at 5000.365 kb on + strand, within ABIE41_RS24205at 5000.366 kb on - strand, within ABIE41_RS24205at 5000.366 kb on - strand, within ABIE41_RS24205at 5000.366 kb on - strand, within ABIE41_RS24205at 5000.638 kb on + strandat 5000.638 kb on + strandat 5000.638 kb on + strandat 5000.639 kb on - strandat 5000.639 kb on - strandat 5000.741 kb on - strandat 5000.968 kb on + strand, within ABIE41_RS24210at 5001.094 kb on + strandat 5001.094 kb on + strandat 5001.094 kb on + strandat 5001.095 kb on - strandat 5001.095 kb on - strandat 5001.095 kb on - strandat 5001.202 kb on + strand, within ABIE41_RS24215at 5001.202 kb on + strand, within ABIE41_RS24215at 5001.202 kb on + strand, within ABIE41_RS24215at 5001.202 kb on + strand, within ABIE41_RS24215at 5001.202 kb on + strand, within ABIE41_RS24215at 5001.203 kb on - strand, within ABIE41_RS24215at 5001.265 kb on + strand, within ABIE41_RS24215at 5001.370 kb on + strand, within ABIE41_RS24215at 5001.370 kb on + strand, within ABIE41_RS24215at 5001.370 kb on + strand, within ABIE41_RS24215at 5001.370 kb on + strand, within ABIE41_RS24215at 5001.370 kb on + strand, within ABIE41_RS24215at 5001.370 kb on + strand, within ABIE41_RS24215at 5001.370 kb on + strand, within ABIE41_RS24215at 5001.370 kb on + strand, within ABIE41_RS24215at 5001.371 kb on - strand, within ABIE41_RS24215at 5001.371 kb on - strand, within ABIE41_RS24215at 5001.544 kb on + strand, within ABIE41_RS24215at 5001.544 kb on + strand, within ABIE41_RS24215at 5001.544 kb on + strand, within ABIE41_RS24215at 5001.544 kb on + strand, within ABIE41_RS24215at 5001.544 kb on + strand, within ABIE41_RS24215at 5001.544 kb on + strand, within ABIE41_RS24215at 5001.544 kb on + strand, within ABIE41_RS24215at 5001.545 kb on - strand, within ABIE41_RS24215at 5001.545 kb on - strand, within ABIE41_RS24215at 5001.545 kb on - strand, within ABIE41_RS24215at 5001.545 kb on - strand, within ABIE41_RS24215at 5001.572 kb on + strand, within ABIE41_RS24215at 5001.572 kb on + strand, within ABIE41_RS24215at 5001.573 kb on - strand, within ABIE41_RS24215at 5001.788 kb on + strand, within ABIE41_RS24215at 5001.788 kb on + strand, within ABIE41_RS24215at 5001.826 kb on + strand, within ABIE41_RS24215at 5001.826 kb on + strand, within ABIE41_RS24215at 5001.826 kb on + strand, within ABIE41_RS24215at 5001.826 kb on + strand, within ABIE41_RS24215at 5001.827 kb on - strand, within ABIE41_RS24215at 5001.827 kb on - strand, within ABIE41_RS24215at 5001.827 kb on - strand, within ABIE41_RS24215at 5001.913 kb on + strand, within ABIE41_RS24215at 5001.914 kb on - strand, within ABIE41_RS24215at 5001.914 kb on - strand, within ABIE41_RS24215

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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5,000,263 + ABIE41_RS24205 0.44 +0.3
5,000,263 + ABIE41_RS24205 0.44 -0.5
5,000,263 + ABIE41_RS24205 0.44 +0.9
5,000,263 + ABIE41_RS24205 0.44 -0.5
5,000,263 + ABIE41_RS24205 0.44 -0.2
5,000,264 - ABIE41_RS24205 0.44 +0.1
5,000,264 - ABIE41_RS24205 0.44 -0.4
5,000,264 - ABIE41_RS24205 0.44 -0.4
5,000,264 - ABIE41_RS24205 0.44 +1.0
5,000,264 - ABIE41_RS24205 0.44 +0.8
5,000,264 - ABIE41_RS24205 0.44 +0.5
5,000,265 + ABIE41_RS24205 0.44 +0.6
5,000,265 + ABIE41_RS24205 0.44 +0.4
5,000,266 - ABIE41_RS24205 0.45 +0.1
5,000,266 - ABIE41_RS24205 0.45 -0.4
5,000,266 - ABIE41_RS24205 0.45 -0.8
5,000,268 - ABIE41_RS24205 0.45 +0.2
5,000,284 + ABIE41_RS24205 0.47 -3.0
5,000,285 - ABIE41_RS24205 0.47 +0.6
5,000,365 + ABIE41_RS24205 0.57 -0.1
5,000,365 + ABIE41_RS24205 0.57 -1.2
5,000,366 - ABIE41_RS24205 0.58 +1.3
5,000,366 - ABIE41_RS24205 0.58 -0.2
5,000,366 - ABIE41_RS24205 0.58 +0.1
5,000,638 + -1.2
5,000,638 + +0.2
5,000,638 + -0.0
5,000,639 - +1.4
5,000,639 - +0.8
5,000,741 - +0.8
5,000,968 + ABIE41_RS24210 0.57 +0.6
5,001,094 + +0.8
5,001,094 + +0.4
5,001,094 + +0.3
5,001,095 - -0.5
5,001,095 - -1.1
5,001,095 - -1.0
5,001,202 + ABIE41_RS24215 0.11 +0.8
5,001,202 + ABIE41_RS24215 0.11 +0.4
5,001,202 + ABIE41_RS24215 0.11 -1.0
5,001,202 + ABIE41_RS24215 0.11 +0.7
5,001,202 + ABIE41_RS24215 0.11 -0.2
5,001,203 - ABIE41_RS24215 0.11 +0.3
5,001,265 + ABIE41_RS24215 0.14 -0.1
5,001,370 + ABIE41_RS24215 0.21 -0.2
5,001,370 + ABIE41_RS24215 0.21 +0.1
5,001,370 + ABIE41_RS24215 0.21 -1.3
5,001,370 + ABIE41_RS24215 0.21 -1.0
5,001,370 + ABIE41_RS24215 0.21 +0.4
5,001,370 + ABIE41_RS24215 0.21 -0.0
5,001,370 + ABIE41_RS24215 0.21 -0.2
5,001,370 + ABIE41_RS24215 0.21 -2.3
5,001,371 - ABIE41_RS24215 0.21 -0.9
5,001,371 - ABIE41_RS24215 0.21 -0.8
5,001,544 + ABIE41_RS24215 0.31 +0.0
5,001,544 + ABIE41_RS24215 0.31 -0.2
5,001,544 + ABIE41_RS24215 0.31 +1.6
5,001,544 + ABIE41_RS24215 0.31 -0.5
5,001,544 + ABIE41_RS24215 0.31 +0.1
5,001,544 + ABIE41_RS24215 0.31 +0.2
5,001,544 + ABIE41_RS24215 0.31 +0.2
5,001,545 - ABIE41_RS24215 0.31 +0.0
5,001,545 - ABIE41_RS24215 0.31 +0.8
5,001,545 - ABIE41_RS24215 0.31 -0.1
5,001,545 - ABIE41_RS24215 0.31 -2.3
5,001,572 + ABIE41_RS24215 0.33 +0.9
5,001,572 + ABIE41_RS24215 0.33 -0.5
5,001,573 - ABIE41_RS24215 0.33 +0.1
5,001,788 + ABIE41_RS24215 0.45 -0.9
5,001,788 + ABIE41_RS24215 0.45 +0.2
5,001,826 + ABIE41_RS24215 0.48 -0.4
5,001,826 + ABIE41_RS24215 0.48 -0.8
5,001,826 + ABIE41_RS24215 0.48 -0.3
5,001,826 + ABIE41_RS24215 0.48 +0.7
5,001,827 - ABIE41_RS24215 0.48 -0.5
5,001,827 - ABIE41_RS24215 0.48 -2.4
5,001,827 - ABIE41_RS24215 0.48 -2.2
5,001,913 + ABIE41_RS24215 0.53 +0.3
5,001,914 - ABIE41_RS24215 0.53 +0.2
5,001,914 - ABIE41_RS24215 0.53 -2.4

Or see this region's nucleotide sequence