Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21845 and ABIE41_RS21850 are separated by 64 nucleotides ABIE41_RS21850 and ABIE41_RS21855 are separated by 7 nucleotides ABIE41_RS21855 and ABIE41_RS21860 are separated by 201 nucleotides ABIE41_RS21860 and ABIE41_RS21865 are separated by 109 nucleotides
ABIE41_RS21845: ABIE41_RS21845 - VWA domain-containing protein, at 4,489,047 to 4,490,222
_RS21845
ABIE41_RS21850: ABIE41_RS21850 - hypothetical protein, at 4,490,287 to 4,490,886
_RS21850
ABIE41_RS21855: ABIE41_RS21855 - universal stress protein, at 4,490,894 to 4,491,316
_RS21855
ABIE41_RS21860: ABIE41_RS21860 - 2Fe-2S iron-sulfur cluster-binding protein, at 4,491,518 to 4,491,838
_RS21860
ABIE41_RS21865: ABIE41_RS21865 - Hpt domain-containing protein, at 4,491,948 to 4,492,283
_RS21865
Position (kb) 4490
4491
4492 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4489.920 kb on + strand, within ABIE41_RS21845 at 4490.121 kb on + strand at 4490.121 kb on + strand at 4490.122 kb on - strand at 4490.122 kb on - strand at 4490.122 kb on - strand at 4490.274 kb on + strand at 4490.275 kb on - strand at 4490.455 kb on + strand, within ABIE41_RS21850 at 4490.455 kb on + strand, within ABIE41_RS21850 at 4490.455 kb on + strand, within ABIE41_RS21850 at 4490.455 kb on + strand, within ABIE41_RS21850 at 4490.456 kb on - strand, within ABIE41_RS21850 at 4490.456 kb on - strand, within ABIE41_RS21850 at 4490.456 kb on - strand, within ABIE41_RS21850 at 4490.456 kb on - strand, within ABIE41_RS21850 at 4490.456 kb on - strand, within ABIE41_RS21850 at 4490.469 kb on + strand, within ABIE41_RS21850 at 4490.470 kb on - strand, within ABIE41_RS21850 at 4490.582 kb on - strand, within ABIE41_RS21850 at 4490.749 kb on + strand, within ABIE41_RS21850 at 4490.750 kb on - strand, within ABIE41_RS21850 at 4490.791 kb on + strand, within ABIE41_RS21850 at 4490.791 kb on + strand, within ABIE41_RS21850 at 4490.792 kb on - strand, within ABIE41_RS21850 at 4490.792 kb on - strand, within ABIE41_RS21850 at 4490.792 kb on - strand, within ABIE41_RS21850 at 4490.961 kb on + strand, within ABIE41_RS21855 at 4490.962 kb on - strand, within ABIE41_RS21855 at 4490.962 kb on - strand, within ABIE41_RS21855 at 4491.172 kb on + strand, within ABIE41_RS21855 at 4491.173 kb on - strand, within ABIE41_RS21855 at 4491.173 kb on - strand, within ABIE41_RS21855 at 4491.173 kb on - strand, within ABIE41_RS21855 at 4491.174 kb on + strand, within ABIE41_RS21855 at 4491.174 kb on + strand, within ABIE41_RS21855 at 4491.175 kb on - strand, within ABIE41_RS21855 at 4491.175 kb on - strand, within ABIE41_RS21855 at 4491.175 kb on - strand, within ABIE41_RS21855 at 4491.202 kb on - strand, within ABIE41_RS21855 at 4491.202 kb on - strand, within ABIE41_RS21855 at 4491.202 kb on - strand, within ABIE41_RS21855 at 4491.202 kb on - strand, within ABIE41_RS21855 at 4491.312 kb on + strand at 4491.312 kb on + strand at 4491.313 kb on - strand at 4491.349 kb on + strand at 4491.350 kb on - strand at 4491.684 kb on + strand, within ABIE41_RS21860 at 4491.684 kb on + strand, within ABIE41_RS21860 at 4491.684 kb on + strand, within ABIE41_RS21860 at 4491.684 kb on + strand, within ABIE41_RS21860 at 4491.685 kb on - strand, within ABIE41_RS21860 at 4491.685 kb on - strand, within ABIE41_RS21860 at 4491.685 kb on - strand, within ABIE41_RS21860 at 4491.875 kb on - strand at 4491.875 kb on - strand at 4491.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 4,489,920 + ABIE41_RS21845 0.74 +0.6 4,490,121 + +1.1 4,490,121 + +0.2 4,490,122 - -1.4 4,490,122 - -0.8 4,490,122 - +0.0 4,490,274 + +1.9 4,490,275 - +0.8 4,490,455 + ABIE41_RS21850 0.28 -0.5 4,490,455 + ABIE41_RS21850 0.28 +0.3 4,490,455 + ABIE41_RS21850 0.28 -0.4 4,490,455 + ABIE41_RS21850 0.28 +0.6 4,490,456 - ABIE41_RS21850 0.28 -0.1 4,490,456 - ABIE41_RS21850 0.28 -0.3 4,490,456 - ABIE41_RS21850 0.28 -3.9 4,490,456 - ABIE41_RS21850 0.28 +0.4 4,490,456 - ABIE41_RS21850 0.28 +0.0 4,490,469 + ABIE41_RS21850 0.30 -0.4 4,490,470 - ABIE41_RS21850 0.30 -0.0 4,490,582 - ABIE41_RS21850 0.49 -2.8 4,490,749 + ABIE41_RS21850 0.77 +0.5 4,490,750 - ABIE41_RS21850 0.77 +0.2 4,490,791 + ABIE41_RS21850 0.84 +1.4 4,490,791 + ABIE41_RS21850 0.84 -0.1 4,490,792 - ABIE41_RS21850 0.84 +0.7 4,490,792 - ABIE41_RS21850 0.84 +2.3 4,490,792 - ABIE41_RS21850 0.84 -0.8 4,490,961 + ABIE41_RS21855 0.16 +1.6 4,490,962 - ABIE41_RS21855 0.16 +0.3 4,490,962 - ABIE41_RS21855 0.16 -0.2 4,491,172 + ABIE41_RS21855 0.66 -0.9 4,491,173 - ABIE41_RS21855 0.66 +0.0 4,491,173 - ABIE41_RS21855 0.66 -0.3 4,491,173 - ABIE41_RS21855 0.66 -1.1 4,491,174 + ABIE41_RS21855 0.66 -0.0 4,491,174 + ABIE41_RS21855 0.66 +0.3 4,491,175 - ABIE41_RS21855 0.66 -0.9 4,491,175 - ABIE41_RS21855 0.66 -0.1 4,491,175 - ABIE41_RS21855 0.66 -0.2 4,491,202 - ABIE41_RS21855 0.73 +0.4 4,491,202 - ABIE41_RS21855 0.73 +0.8 4,491,202 - ABIE41_RS21855 0.73 -0.8 4,491,202 - ABIE41_RS21855 0.73 -0.6 4,491,312 + -1.4 4,491,312 + -0.5 4,491,313 - -0.6 4,491,349 + -0.2 4,491,350 - -0.7 4,491,684 + ABIE41_RS21860 0.52 -0.2 4,491,684 + ABIE41_RS21860 0.52 -0.3 4,491,684 + ABIE41_RS21860 0.52 -2.1 4,491,684 + ABIE41_RS21860 0.52 +1.4 4,491,685 - ABIE41_RS21860 0.52 -1.6 4,491,685 - ABIE41_RS21860 0.52 -0.3 4,491,685 - ABIE41_RS21860 0.52 -0.7 4,491,875 - +0.8 4,491,875 - +0.3 4,491,875 - -0.2
Or see this region's nucleotide sequence