Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21170 and ABIE41_RS21175 overlap by 4 nucleotides ABIE41_RS21175 and ABIE41_RS21180 are separated by 73 nucleotides ABIE41_RS21180 and ABIE41_RS21185 are separated by 270 nucleotides ABIE41_RS21185 and ABIE41_RS21190 are separated by 9 nucleotides
ABIE41_RS21170: ABIE41_RS21170 - ABC transporter permease subunit, at 4,352,555 to 4,353,271
_RS21170
ABIE41_RS21175: ABIE41_RS21175 - ABC transporter permease subunit, at 4,353,268 to 4,353,996
_RS21175
ABIE41_RS21180: ABIE41_RS21180 - transporter substrate-binding domain-containing protein, at 4,354,070 to 4,354,849
_RS21180
ABIE41_RS21185: ABIE41_RS21185 - hypothetical protein, at 4,355,120 to 4,355,797
_RS21185
ABIE41_RS21190: ABIE41_RS21190 - agmatinase, at 4,355,807 to 4,356,859
_RS21190
Position (kb) 4354
4355 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4353.216 kb on + strand at 4353.216 kb on + strand at 4353.216 kb on + strand at 4353.217 kb on - strand at 4353.217 kb on - strand at 4353.217 kb on - strand at 4353.217 kb on - strand at 4353.217 kb on - strand at 4353.217 kb on - strand at 4353.362 kb on + strand, within ABIE41_RS21175 at 4353.362 kb on + strand, within ABIE41_RS21175 at 4353.363 kb on - strand, within ABIE41_RS21175 at 4353.363 kb on - strand, within ABIE41_RS21175 at 4353.363 kb on - strand, within ABIE41_RS21175 at 4353.363 kb on - strand, within ABIE41_RS21175 at 4353.363 kb on - strand, within ABIE41_RS21175 at 4353.363 kb on - strand, within ABIE41_RS21175 at 4353.363 kb on - strand, within ABIE41_RS21175 at 4353.761 kb on + strand, within ABIE41_RS21175 at 4353.761 kb on + strand, within ABIE41_RS21175 at 4353.762 kb on - strand, within ABIE41_RS21175 at 4353.762 kb on - strand, within ABIE41_RS21175 at 4353.770 kb on + strand, within ABIE41_RS21175 at 4353.770 kb on + strand, within ABIE41_RS21175 at 4353.770 kb on + strand, within ABIE41_RS21175 at 4353.770 kb on + strand, within ABIE41_RS21175 at 4353.770 kb on + strand, within ABIE41_RS21175 at 4353.770 kb on + strand, within ABIE41_RS21175 at 4353.770 kb on + strand, within ABIE41_RS21175 at 4353.770 kb on + strand, within ABIE41_RS21175 at 4353.771 kb on - strand, within ABIE41_RS21175 at 4353.771 kb on - strand, within ABIE41_RS21175 at 4353.771 kb on - strand, within ABIE41_RS21175 at 4353.771 kb on - strand, within ABIE41_RS21175 at 4353.812 kb on + strand, within ABIE41_RS21175 at 4353.813 kb on - strand, within ABIE41_RS21175 at 4353.813 kb on - strand, within ABIE41_RS21175 at 4353.813 kb on - strand, within ABIE41_RS21175 at 4354.092 kb on + strand at 4354.092 kb on + strand at 4354.093 kb on - strand at 4354.093 kb on - strand at 4354.093 kb on - strand at 4354.093 kb on - strand at 4354.093 kb on - strand at 4354.093 kb on - strand at 4354.308 kb on + strand, within ABIE41_RS21180 at 4354.308 kb on + strand, within ABIE41_RS21180 at 4354.309 kb on - strand, within ABIE41_RS21180 at 4354.383 kb on + strand, within ABIE41_RS21180 at 4354.383 kb on + strand, within ABIE41_RS21180 at 4354.383 kb on + strand, within ABIE41_RS21180 at 4354.383 kb on + strand, within ABIE41_RS21180 at 4354.383 kb on - strand, within ABIE41_RS21180 at 4354.384 kb on - strand, within ABIE41_RS21180 at 4354.398 kb on + strand, within ABIE41_RS21180 at 4354.399 kb on - strand, within ABIE41_RS21180 at 4354.399 kb on - strand, within ABIE41_RS21180 at 4354.584 kb on + strand, within ABIE41_RS21180 at 4354.584 kb on + strand, within ABIE41_RS21180 at 4354.584 kb on + strand, within ABIE41_RS21180 at 4354.584 kb on + strand, within ABIE41_RS21180 at 4354.584 kb on + strand, within ABIE41_RS21180 at 4354.585 kb on - strand, within ABIE41_RS21180 at 4354.585 kb on - strand, within ABIE41_RS21180 at 4354.585 kb on - strand, within ABIE41_RS21180 at 4354.585 kb on - strand, within ABIE41_RS21180 at 4354.852 kb on + strand at 4354.852 kb on + strand at 4355.066 kb on + strand at 4355.066 kb on + strand at 4355.066 kb on + strand at 4355.067 kb on - strand at 4355.600 kb on + strand, within ABIE41_RS21185 at 4355.601 kb on - strand, within ABIE41_RS21185
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 4,353,216 + -0.7 4,353,216 + +0.5 4,353,216 + -0.9 4,353,217 - -1.3 4,353,217 - +0.4 4,353,217 - -0.2 4,353,217 - +0.2 4,353,217 - -0.2 4,353,217 - -0.8 4,353,362 + ABIE41_RS21175 0.13 +1.4 4,353,362 + ABIE41_RS21175 0.13 +0.2 4,353,363 - ABIE41_RS21175 0.13 -0.4 4,353,363 - ABIE41_RS21175 0.13 -2.7 4,353,363 - ABIE41_RS21175 0.13 -0.2 4,353,363 - ABIE41_RS21175 0.13 -1.8 4,353,363 - ABIE41_RS21175 0.13 +1.8 4,353,363 - ABIE41_RS21175 0.13 +0.2 4,353,363 - ABIE41_RS21175 0.13 +0.3 4,353,761 + ABIE41_RS21175 0.68 +0.2 4,353,761 + ABIE41_RS21175 0.68 -0.2 4,353,762 - ABIE41_RS21175 0.68 -0.0 4,353,762 - ABIE41_RS21175 0.68 +0.1 4,353,770 + ABIE41_RS21175 0.69 +0.7 4,353,770 + ABIE41_RS21175 0.69 +0.2 4,353,770 + ABIE41_RS21175 0.69 -0.0 4,353,770 + ABIE41_RS21175 0.69 +0.6 4,353,770 + ABIE41_RS21175 0.69 -1.0 4,353,770 + ABIE41_RS21175 0.69 -2.5 4,353,770 + ABIE41_RS21175 0.69 +0.0 4,353,770 + ABIE41_RS21175 0.69 -0.3 4,353,771 - ABIE41_RS21175 0.69 -0.1 4,353,771 - ABIE41_RS21175 0.69 +0.7 4,353,771 - ABIE41_RS21175 0.69 +0.1 4,353,771 - ABIE41_RS21175 0.69 +1.0 4,353,812 + ABIE41_RS21175 0.75 +0.1 4,353,813 - ABIE41_RS21175 0.75 +1.0 4,353,813 - ABIE41_RS21175 0.75 -0.9 4,353,813 - ABIE41_RS21175 0.75 -2.9 4,354,092 + +0.6 4,354,092 + -0.1 4,354,093 - +0.0 4,354,093 - -1.7 4,354,093 - +1.0 4,354,093 - +1.5 4,354,093 - +0.8 4,354,093 - -1.5 4,354,308 + ABIE41_RS21180 0.31 +0.9 4,354,308 + ABIE41_RS21180 0.31 -0.2 4,354,309 - ABIE41_RS21180 0.31 -4.1 4,354,383 + ABIE41_RS21180 0.40 +0.9 4,354,383 + ABIE41_RS21180 0.40 -0.1 4,354,383 + ABIE41_RS21180 0.40 -0.2 4,354,383 + ABIE41_RS21180 0.40 -1.1 4,354,383 - ABIE41_RS21180 0.40 -0.5 4,354,384 - ABIE41_RS21180 0.40 +0.3 4,354,398 + ABIE41_RS21180 0.42 +1.3 4,354,399 - ABIE41_RS21180 0.42 -0.1 4,354,399 - ABIE41_RS21180 0.42 +0.3 4,354,584 + ABIE41_RS21180 0.66 +1.2 4,354,584 + ABIE41_RS21180 0.66 +0.3 4,354,584 + ABIE41_RS21180 0.66 +0.4 4,354,584 + ABIE41_RS21180 0.66 -0.2 4,354,584 + ABIE41_RS21180 0.66 -1.2 4,354,585 - ABIE41_RS21180 0.66 +0.2 4,354,585 - ABIE41_RS21180 0.66 -1.0 4,354,585 - ABIE41_RS21180 0.66 +1.1 4,354,585 - ABIE41_RS21180 0.66 +0.1 4,354,852 + -0.0 4,354,852 + +0.4 4,355,066 + -0.1 4,355,066 + +0.8 4,355,066 + +1.0 4,355,067 - -0.5 4,355,600 + ABIE41_RS21185 0.71 -0.6 4,355,601 - ABIE41_RS21185 0.71 -1.6
Or see this region's nucleotide sequence