Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15720 and ABIE41_RS15725 are separated by 244 nucleotides ABIE41_RS15725 and ABIE41_RS15730 are separated by 24 nucleotides ABIE41_RS15730 and ABIE41_RS15735 are separated by 2 nucleotides
ABIE41_RS15720: ABIE41_RS15720 - BA14K family protein, at 3,218,992 to 3,219,459
_RS15720
ABIE41_RS15725: ABIE41_RS15725 - TIGR00645 family protein, at 3,219,704 to 3,220,288
_RS15725
ABIE41_RS15730: ABIE41_RS15730 - anthranilate synthase component I, at 3,220,313 to 3,221,842
_RS15730
ABIE41_RS15735: ABIE41_RS15735 - SurA N-terminal domain-containing protein, at 3,221,845 to 3,223,758
_RS15735
Position (kb) 3220
3221
3222 Strain fitness (log2 ratio) -2
-1
0
1 at 3219.522 kb on + strand at 3219.537 kb on + strand at 3219.537 kb on + strand at 3219.538 kb on - strand at 3219.591 kb on + strand at 3219.813 kb on - strand, within ABIE41_RS15725 at 3219.842 kb on + strand, within ABIE41_RS15725 at 3219.842 kb on + strand, within ABIE41_RS15725 at 3219.843 kb on - strand, within ABIE41_RS15725 at 3219.843 kb on - strand, within ABIE41_RS15725 at 3220.146 kb on + strand, within ABIE41_RS15725 at 3220.146 kb on + strand, within ABIE41_RS15725 at 3220.146 kb on + strand, within ABIE41_RS15725 at 3220.147 kb on - strand, within ABIE41_RS15725 at 3220.173 kb on - strand, within ABIE41_RS15725 at 3222.351 kb on - strand, within ABIE41_RS15735 at 3222.351 kb on - strand, within ABIE41_RS15735 at 3222.360 kb on - strand, within ABIE41_RS15735 at 3222.360 kb on - strand, within ABIE41_RS15735
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 3,219,522 + -0.2 3,219,537 + -2.5 3,219,537 + -0.2 3,219,538 - +0.0 3,219,591 + -0.3 3,219,813 - ABIE41_RS15725 0.19 +0.6 3,219,842 + ABIE41_RS15725 0.24 -2.5 3,219,842 + ABIE41_RS15725 0.24 -2.7 3,219,843 - ABIE41_RS15725 0.24 -1.0 3,219,843 - ABIE41_RS15725 0.24 +1.0 3,220,146 + ABIE41_RS15725 0.76 +0.2 3,220,146 + ABIE41_RS15725 0.76 -0.8 3,220,146 + ABIE41_RS15725 0.76 -1.3 3,220,147 - ABIE41_RS15725 0.76 +0.1 3,220,173 - ABIE41_RS15725 0.80 +0.1 3,222,351 - ABIE41_RS15735 0.26 -0.1 3,222,351 - ABIE41_RS15735 0.26 +0.8 3,222,360 - ABIE41_RS15735 0.27 +0.7 3,222,360 - ABIE41_RS15735 0.27 +0.3
Or see this region's nucleotide sequence