Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29390 and ABIE40_RS29395 are separated by 469 nucleotides
ABIE40_RS29390: ABIE40_RS29390 - hypothetical protein, at 575,124 to 575,267
_RS29390
ABIE40_RS29395: ABIE40_RS29395 - hypothetical protein, at 575,737 to 575,946
_RS29395
Position (kb) 575
576 Strain fitness (log2 ratio) -2
-1
0
1 at 574.179 kb on + strand at 574.211 kb on + strand at 574.211 kb on + strand at 574.211 kb on + strand at 574.212 kb on - strand at 574.212 kb on - strand at 574.212 kb on - strand at 574.212 kb on - strand at 574.212 kb on - strand at 574.212 kb on - strand at 574.254 kb on + strand at 574.254 kb on + strand at 574.254 kb on + strand at 574.254 kb on + strand at 574.254 kb on + strand at 574.255 kb on - strand at 574.255 kb on - strand at 574.255 kb on - strand at 574.377 kb on + strand at 574.377 kb on + strand at 574.378 kb on - strand at 574.378 kb on - strand at 574.412 kb on + strand at 574.412 kb on + strand at 574.413 kb on - strand at 574.413 kb on - strand at 574.413 kb on - strand at 574.413 kb on - strand at 574.421 kb on + strand at 574.489 kb on + strand at 574.489 kb on + strand at 574.504 kb on - strand at 574.504 kb on - strand at 574.619 kb on - strand at 574.729 kb on + strand at 574.729 kb on + strand at 574.729 kb on + strand at 574.729 kb on + strand at 574.730 kb on - strand at 574.730 kb on - strand at 574.730 kb on - strand at 574.730 kb on - strand at 574.730 kb on - strand at 574.751 kb on + strand at 574.751 kb on + strand at 574.752 kb on - strand at 574.841 kb on + strand at 574.948 kb on - strand at 575.067 kb on - strand at 575.077 kb on + strand at 575.100 kb on + strand at 575.119 kb on + strand at 575.119 kb on + strand at 575.120 kb on - strand at 575.120 kb on - strand at 575.120 kb on - strand at 575.123 kb on + strand at 575.123 kb on + strand at 575.123 kb on + strand at 575.123 kb on + strand at 575.123 kb on + strand at 575.123 kb on + strand at 575.123 kb on + strand at 575.123 kb on + strand at 575.124 kb on - strand at 575.124 kb on - strand at 575.124 kb on - strand at 575.124 kb on - strand at 575.202 kb on + strand, within ABIE40_RS29390 at 575.265 kb on + strand at 575.266 kb on - strand at 575.266 kb on - strand at 575.298 kb on + strand at 575.336 kb on + strand at 575.351 kb on + strand at 575.351 kb on + strand at 575.352 kb on - strand at 575.352 kb on - strand at 575.376 kb on + strand at 575.376 kb on + strand at 575.376 kb on + strand at 575.376 kb on + strand at 575.376 kb on + strand at 575.376 kb on + strand at 575.376 kb on + strand at 575.377 kb on - strand at 575.377 kb on - strand at 575.493 kb on + strand at 575.493 kb on + strand at 575.494 kb on - strand at 575.521 kb on + strand at 575.522 kb on - strand at 575.522 kb on - strand at 575.526 kb on + strand at 575.553 kb on + strand at 575.554 kb on - strand at 575.618 kb on + strand at 575.677 kb on + strand at 575.677 kb on + strand at 575.678 kb on - strand at 575.739 kb on - strand at 575.757 kb on - strand at 575.768 kb on - strand, within ABIE40_RS29395 at 575.768 kb on - strand, within ABIE40_RS29395 at 575.768 kb on - strand, within ABIE40_RS29395 at 575.812 kb on + strand, within ABIE40_RS29395 at 575.926 kb on - strand at 575.926 kb on - strand at 575.995 kb on + strand at 575.996 kb on - strand at 575.996 kb on - strand at 575.996 kb on - strand at 575.996 kb on - strand at 576.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 574,179 + -0.4 574,211 + -0.8 574,211 + +0.3 574,211 + +0.5 574,212 - -0.8 574,212 - +0.9 574,212 - -1.2 574,212 - -0.2 574,212 - +0.5 574,212 - +0.3 574,254 + -1.0 574,254 + -0.3 574,254 + -1.2 574,254 + -0.4 574,254 + -0.3 574,255 - +0.3 574,255 - -1.2 574,255 - -2.0 574,377 + -2.0 574,377 + +0.0 574,378 - +0.9 574,378 - -0.5 574,412 + +0.9 574,412 + -0.4 574,413 - -0.4 574,413 - +0.1 574,413 - -0.5 574,413 - +0.3 574,421 + -0.7 574,489 + -0.3 574,489 + +1.1 574,504 - -0.6 574,504 - -1.2 574,619 - -0.4 574,729 + -0.2 574,729 + +0.0 574,729 + -0.3 574,729 + -0.0 574,730 - +0.1 574,730 - +0.5 574,730 - -0.7 574,730 - -0.9 574,730 - -0.2 574,751 + +0.6 574,751 + +1.3 574,752 - -0.2 574,841 + -1.6 574,948 - -0.2 575,067 - -1.0 575,077 + -0.1 575,100 + -0.1 575,119 + +0.4 575,119 + -0.7 575,120 - +0.0 575,120 - -0.1 575,120 - +0.1 575,123 + -1.1 575,123 + +0.7 575,123 + -0.5 575,123 + +0.7 575,123 + +1.5 575,123 + +0.5 575,123 + -0.4 575,123 + +0.5 575,124 - -1.1 575,124 - +0.2 575,124 - -0.9 575,124 - +1.3 575,202 + ABIE40_RS29390 0.54 -1.4 575,265 + +0.1 575,266 - -0.5 575,266 - +0.0 575,298 + -0.5 575,336 + -0.0 575,351 + +1.0 575,351 + +0.0 575,352 - +1.5 575,352 - +0.6 575,376 + +0.2 575,376 + +0.3 575,376 + -0.0 575,376 + -2.2 575,376 + -0.7 575,376 + -1.3 575,376 + +0.4 575,377 - -1.8 575,377 - +0.3 575,493 + -0.1 575,493 + +0.1 575,494 - -1.0 575,521 + +0.3 575,522 - +1.5 575,522 - -0.6 575,526 + +0.2 575,553 + +1.0 575,554 - +1.2 575,618 + +0.4 575,677 + +0.3 575,677 + +0.3 575,678 - -0.3 575,739 - -0.8 575,757 - +0.2 575,768 - ABIE40_RS29395 0.15 -0.5 575,768 - ABIE40_RS29395 0.15 +0.2 575,768 - ABIE40_RS29395 0.15 +0.3 575,812 + ABIE40_RS29395 0.36 -0.3 575,926 - -0.5 575,926 - -0.5 575,995 + -0.1 575,996 - -0.6 575,996 - -0.4 575,996 - +0.0 575,996 - +0.6 576,050 + -0.3
Or see this region's nucleotide sequence