Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21490 and ABIE40_RS21495 are separated by 98 nucleotides ABIE40_RS21495 and ABIE40_RS21500 are separated by 221 nucleotides ABIE40_RS21500 and ABIE40_RS21505 are separated by 153 nucleotides
ABIE40_RS21490: ABIE40_RS21490 - XRE family transcriptional regulator, at 417,606 to 418,136
_RS21490
ABIE40_RS21495: ABIE40_RS21495 - hypothetical protein, at 418,235 to 418,477
_RS21495
ABIE40_RS21500: ABIE40_RS21500 - helix-turn-helix transcriptional regulator, at 418,699 to 419,160
_RS21500
ABIE40_RS21505: ABIE40_RS21505 - hypothetical protein, at 419,314 to 420,420
_RS21505
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 417.732 kb on - strand, within ABIE40_RS21490 at 417.732 kb on - strand, within ABIE40_RS21490 at 417.824 kb on + strand, within ABIE40_RS21490 at 417.825 kb on - strand, within ABIE40_RS21490 at 417.942 kb on + strand, within ABIE40_RS21490 at 417.942 kb on + strand, within ABIE40_RS21490 at 417.981 kb on - strand, within ABIE40_RS21490 at 418.060 kb on - strand, within ABIE40_RS21490 at 418.077 kb on + strand, within ABIE40_RS21490 at 418.077 kb on + strand, within ABIE40_RS21490 at 418.077 kb on + strand, within ABIE40_RS21490 at 418.077 kb on + strand, within ABIE40_RS21490 at 418.077 kb on + strand, within ABIE40_RS21490 at 418.077 kb on + strand, within ABIE40_RS21490 at 418.077 kb on + strand, within ABIE40_RS21490 at 418.078 kb on - strand, within ABIE40_RS21490 at 418.078 kb on - strand, within ABIE40_RS21490 at 418.078 kb on - strand, within ABIE40_RS21490 at 418.078 kb on - strand, within ABIE40_RS21490 at 418.078 kb on - strand, within ABIE40_RS21490 at 418.083 kb on + strand, within ABIE40_RS21490 at 418.083 kb on + strand, within ABIE40_RS21490 at 418.083 kb on + strand, within ABIE40_RS21490 at 418.134 kb on + strand at 418.134 kb on + strand at 418.244 kb on + strand at 418.686 kb on + strand at 418.687 kb on - strand at 418.687 kb on - strand at 418.687 kb on - strand at 418.701 kb on - strand at 418.952 kb on + strand, within ABIE40_RS21500 at 418.953 kb on - strand, within ABIE40_RS21500 at 419.027 kb on + strand, within ABIE40_RS21500 at 419.027 kb on + strand, within ABIE40_RS21500 at 419.027 kb on + strand, within ABIE40_RS21500 at 419.028 kb on - strand, within ABIE40_RS21500 at 419.028 kb on - strand, within ABIE40_RS21500 at 419.028 kb on - strand, within ABIE40_RS21500 at 419.028 kb on - strand, within ABIE40_RS21500 at 419.028 kb on - strand, within ABIE40_RS21500 at 419.111 kb on - strand, within ABIE40_RS21500 at 419.126 kb on + strand at 419.126 kb on + strand at 419.126 kb on + strand at 419.127 kb on - strand at 419.127 kb on - strand at 419.229 kb on + strand at 419.229 kb on + strand at 419.229 kb on + strand at 419.229 kb on + strand at 419.230 kb on - strand at 419.230 kb on - strand at 419.233 kb on + strand at 419.233 kb on + strand at 419.233 kb on + strand at 419.233 kb on + strand at 419.233 kb on + strand at 419.233 kb on + strand at 419.233 kb on + strand at 419.234 kb on - strand at 419.234 kb on - strand at 419.234 kb on - strand at 419.238 kb on + strand at 419.238 kb on + strand at 419.238 kb on + strand at 419.239 kb on - strand at 419.239 kb on - strand at 419.245 kb on + strand at 419.245 kb on + strand at 419.246 kb on - strand at 419.266 kb on - strand at 419.304 kb on + strand at 419.304 kb on + strand at 419.304 kb on + strand at 419.304 kb on + strand at 419.304 kb on + strand at 419.304 kb on + strand at 419.304 kb on + strand at 419.305 kb on - strand at 419.305 kb on - strand at 419.305 kb on - strand at 419.305 kb on - strand at 419.305 kb on - strand at 419.305 kb on - strand at 419.305 kb on - strand at 419.306 kb on + strand at 419.306 kb on + strand at 419.306 kb on + strand at 419.306 kb on + strand at 419.306 kb on + strand at 419.306 kb on + strand at 419.306 kb on + strand at 419.307 kb on - strand at 419.307 kb on - strand at 419.307 kb on - strand at 419.307 kb on - strand at 419.307 kb on - strand at 419.308 kb on + strand at 419.308 kb on + strand at 419.309 kb on - strand at 419.311 kb on + strand at 419.311 kb on + strand at 419.312 kb on - strand at 419.312 kb on - strand at 419.315 kb on + strand at 419.315 kb on + strand at 419.315 kb on + strand at 419.315 kb on + strand at 419.315 kb on + strand at 419.316 kb on - strand at 419.618 kb on + strand, within ABIE40_RS21505 at 419.618 kb on + strand, within ABIE40_RS21505 at 419.619 kb on - strand, within ABIE40_RS21505 at 419.619 kb on - strand, within ABIE40_RS21505 at 419.619 kb on - strand, within ABIE40_RS21505 at 419.619 kb on - strand, within ABIE40_RS21505 at 419.649 kb on - strand, within ABIE40_RS21505 at 419.665 kb on - strand, within ABIE40_RS21505 at 419.848 kb on + strand, within ABIE40_RS21505 at 419.848 kb on + strand, within ABIE40_RS21505
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 417,732 - ABIE40_RS21490 0.24 +0.0 417,732 - ABIE40_RS21490 0.24 +0.7 417,824 + ABIE40_RS21490 0.41 -0.2 417,825 - ABIE40_RS21490 0.41 -0.4 417,942 + ABIE40_RS21490 0.63 -0.4 417,942 + ABIE40_RS21490 0.63 +0.0 417,981 - ABIE40_RS21490 0.71 +0.1 418,060 - ABIE40_RS21490 0.85 -0.8 418,077 + ABIE40_RS21490 0.89 -0.9 418,077 + ABIE40_RS21490 0.89 +0.7 418,077 + ABIE40_RS21490 0.89 -0.8 418,077 + ABIE40_RS21490 0.89 +1.1 418,077 + ABIE40_RS21490 0.89 +0.7 418,077 + ABIE40_RS21490 0.89 -0.8 418,077 + ABIE40_RS21490 0.89 -0.1 418,078 - ABIE40_RS21490 0.89 -0.5 418,078 - ABIE40_RS21490 0.89 +1.1 418,078 - ABIE40_RS21490 0.89 -0.2 418,078 - ABIE40_RS21490 0.89 -3.1 418,078 - ABIE40_RS21490 0.89 -1.5 418,083 + ABIE40_RS21490 0.90 +1.1 418,083 + ABIE40_RS21490 0.90 -0.3 418,083 + ABIE40_RS21490 0.90 -1.0 418,134 + -0.1 418,134 + -0.9 418,244 + -0.7 418,686 + +0.5 418,687 - -0.6 418,687 - +0.3 418,687 - -1.0 418,701 - -1.0 418,952 + ABIE40_RS21500 0.55 +0.8 418,953 - ABIE40_RS21500 0.55 +0.4 419,027 + ABIE40_RS21500 0.71 -0.5 419,027 + ABIE40_RS21500 0.71 -0.8 419,027 + ABIE40_RS21500 0.71 -1.2 419,028 - ABIE40_RS21500 0.71 -1.4 419,028 - ABIE40_RS21500 0.71 +1.5 419,028 - ABIE40_RS21500 0.71 -2.7 419,028 - ABIE40_RS21500 0.71 +0.2 419,028 - ABIE40_RS21500 0.71 -1.0 419,111 - ABIE40_RS21500 0.89 +0.4 419,126 + +1.2 419,126 + -0.6 419,126 + -1.2 419,127 - -1.4 419,127 - +0.1 419,229 + -0.1 419,229 + -0.1 419,229 + -0.9 419,229 + -0.6 419,230 - +0.5 419,230 - -0.1 419,233 + -1.7 419,233 + -1.2 419,233 + +1.5 419,233 + -0.2 419,233 + -0.7 419,233 + -0.3 419,233 + +0.2 419,234 - -0.6 419,234 - +0.6 419,234 - -0.4 419,238 + -0.4 419,238 + -0.4 419,238 + +0.8 419,239 - -1.6 419,239 - +0.0 419,245 + +0.2 419,245 + -1.2 419,246 - -1.9 419,266 - -1.9 419,304 + -1.3 419,304 + -0.4 419,304 + +0.2 419,304 + +0.9 419,304 + +0.9 419,304 + -0.1 419,304 + -0.6 419,305 - +0.8 419,305 - -1.2 419,305 - -0.1 419,305 - -0.6 419,305 - +0.4 419,305 - +0.2 419,305 - -0.7 419,306 + -0.1 419,306 + +0.4 419,306 + -0.1 419,306 + -0.5 419,306 + +1.5 419,306 + +0.6 419,306 + +0.7 419,307 - +0.1 419,307 - +1.2 419,307 - -0.7 419,307 - +2.1 419,307 - -0.3 419,308 + -1.0 419,308 + -0.1 419,309 - -1.7 419,311 + -0.5 419,311 + +0.4 419,312 - +0.7 419,312 - +0.1 419,315 + -0.5 419,315 + +0.4 419,315 + +1.0 419,315 + +0.1 419,315 + -0.8 419,316 - -0.1 419,618 + ABIE40_RS21505 0.27 -0.6 419,618 + ABIE40_RS21505 0.27 +0.9 419,619 - ABIE40_RS21505 0.28 -1.1 419,619 - ABIE40_RS21505 0.28 +0.1 419,619 - ABIE40_RS21505 0.28 +1.4 419,619 - ABIE40_RS21505 0.28 +0.3 419,649 - ABIE40_RS21505 0.30 -0.1 419,665 - ABIE40_RS21505 0.32 -0.4 419,848 + ABIE40_RS21505 0.48 +0.5 419,848 + ABIE40_RS21505 0.48 -2.0
Or see this region's nucleotide sequence