Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03660 and ABIE40_RS03665 overlap by 4 nucleotides ABIE40_RS03665 and ABIE40_RS03670 are separated by 76 nucleotides ABIE40_RS03670 and ABIE40_RS03675 are separated by 198 nucleotides
ABIE40_RS03660: ABIE40_RS03660 - ATP phosphoribosyltransferase regulatory subunit, at 723,177 to 724,292
_RS03660
ABIE40_RS03665: ABIE40_RS03665 - ATP phosphoribosyltransferase, at 724,289 to 724,984
_RS03665
ABIE40_RS03670: ABIE40_RS03670 - DoxX family protein, at 725,061 to 725,486
_RS03670
ABIE40_RS03675: ABIE40_RS03675 - glutathione binding-like protein, at 725,685 to 726,395
_RS03675
Position (kb) 724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 723.311 kb on + strand, within ABIE40_RS03660 at 723.312 kb on - strand, within ABIE40_RS03660 at 723.420 kb on + strand, within ABIE40_RS03660 at 723.421 kb on - strand, within ABIE40_RS03660 at 723.426 kb on + strand, within ABIE40_RS03660 at 723.426 kb on + strand, within ABIE40_RS03660 at 723.426 kb on + strand, within ABIE40_RS03660 at 723.426 kb on + strand, within ABIE40_RS03660 at 723.427 kb on - strand, within ABIE40_RS03660 at 723.427 kb on - strand, within ABIE40_RS03660 at 723.475 kb on - strand, within ABIE40_RS03660 at 723.475 kb on - strand, within ABIE40_RS03660 at 723.475 kb on - strand, within ABIE40_RS03660 at 724.122 kb on + strand, within ABIE40_RS03660 at 724.122 kb on + strand, within ABIE40_RS03660 at 724.123 kb on - strand, within ABIE40_RS03660 at 724.123 kb on - strand, within ABIE40_RS03660 at 724.125 kb on + strand, within ABIE40_RS03660 at 724.126 kb on - strand, within ABIE40_RS03660 at 724.126 kb on - strand, within ABIE40_RS03660 at 724.127 kb on + strand, within ABIE40_RS03660 at 724.127 kb on + strand, within ABIE40_RS03660 at 724.128 kb on - strand, within ABIE40_RS03660 at 724.297 kb on + strand at 724.297 kb on + strand at 724.371 kb on + strand, within ABIE40_RS03665 at 724.372 kb on - strand, within ABIE40_RS03665 at 724.372 kb on - strand, within ABIE40_RS03665 at 724.372 kb on - strand, within ABIE40_RS03665 at 724.700 kb on + strand, within ABIE40_RS03665 at 724.701 kb on - strand, within ABIE40_RS03665 at 724.752 kb on - strand, within ABIE40_RS03665 at 724.752 kb on - strand, within ABIE40_RS03665 at 724.756 kb on + strand, within ABIE40_RS03665 at 724.756 kb on + strand, within ABIE40_RS03665 at 724.822 kb on + strand, within ABIE40_RS03665 at 725.040 kb on + strand at 725.040 kb on + strand at 725.040 kb on + strand at 725.041 kb on - strand at 725.041 kb on - strand at 725.041 kb on - strand at 725.041 kb on - strand at 725.063 kb on - strand at 725.063 kb on - strand at 725.069 kb on + strand at 725.070 kb on - strand at 725.079 kb on + strand at 725.079 kb on + strand at 725.080 kb on - strand at 725.080 kb on - strand at 725.080 kb on - strand at 725.080 kb on - strand at 725.130 kb on + strand, within ABIE40_RS03670 at 725.131 kb on - strand, within ABIE40_RS03670 at 725.131 kb on - strand, within ABIE40_RS03670 at 725.131 kb on - strand, within ABIE40_RS03670 at 725.131 kb on - strand, within ABIE40_RS03670 at 725.131 kb on - strand, within ABIE40_RS03670 at 725.131 kb on - strand, within ABIE40_RS03670 at 725.131 kb on - strand, within ABIE40_RS03670 at 725.137 kb on + strand, within ABIE40_RS03670 at 725.137 kb on + strand, within ABIE40_RS03670 at 725.137 kb on + strand, within ABIE40_RS03670 at 725.137 kb on + strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.138 kb on - strand, within ABIE40_RS03670 at 725.212 kb on + strand, within ABIE40_RS03670 at 725.335 kb on + strand, within ABIE40_RS03670 at 725.335 kb on + strand, within ABIE40_RS03670 at 725.335 kb on + strand, within ABIE40_RS03670 at 725.335 kb on + strand, within ABIE40_RS03670 at 725.336 kb on - strand, within ABIE40_RS03670 at 725.477 kb on + strand at 725.478 kb on - strand at 725.492 kb on + strand at 725.492 kb on + strand at 725.492 kb on + strand at 725.492 kb on + strand at 725.492 kb on + strand at 725.493 kb on - strand at 725.493 kb on - strand at 725.538 kb on + strand at 725.538 kb on + strand at 725.539 kb on - strand at 725.652 kb on + strand at 725.652 kb on + strand at 725.652 kb on + strand at 725.652 kb on + strand at 725.652 kb on + strand at 725.652 kb on + strand at 725.652 kb on + strand at 725.653 kb on - strand at 725.754 kb on + strand at 725.755 kb on - strand at 725.755 kb on - strand at 725.755 kb on - strand at 725.755 kb on - strand at 725.829 kb on + strand, within ABIE40_RS03675 at 725.829 kb on + strand, within ABIE40_RS03675 at 725.829 kb on + strand, within ABIE40_RS03675 at 725.829 kb on + strand, within ABIE40_RS03675 at 725.830 kb on - strand, within ABIE40_RS03675 at 725.830 kb on - strand, within ABIE40_RS03675 at 725.830 kb on - strand, within ABIE40_RS03675 at 725.830 kb on - strand, within ABIE40_RS03675 at 725.830 kb on - strand, within ABIE40_RS03675 at 725.830 kb on - strand, within ABIE40_RS03675 at 725.896 kb on + strand, within ABIE40_RS03675 at 725.970 kb on + strand, within ABIE40_RS03675 at 725.970 kb on + strand, within ABIE40_RS03675 at 725.970 kb on + strand, within ABIE40_RS03675 at 725.970 kb on + strand, within ABIE40_RS03675 at 725.970 kb on + strand, within ABIE40_RS03675 at 725.971 kb on - strand, within ABIE40_RS03675 at 725.971 kb on - strand, within ABIE40_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 723,311 + ABIE40_RS03660 0.12 -4.4 723,312 - ABIE40_RS03660 0.12 -2.4 723,420 + ABIE40_RS03660 0.22 -2.3 723,421 - ABIE40_RS03660 0.22 -1.9 723,426 + ABIE40_RS03660 0.22 -2.9 723,426 + ABIE40_RS03660 0.22 -2.9 723,426 + ABIE40_RS03660 0.22 -2.2 723,426 + ABIE40_RS03660 0.22 -4.2 723,427 - ABIE40_RS03660 0.22 -2.7 723,427 - ABIE40_RS03660 0.22 -2.1 723,475 - ABIE40_RS03660 0.27 -0.7 723,475 - ABIE40_RS03660 0.27 -2.1 723,475 - ABIE40_RS03660 0.27 -1.4 724,122 + ABIE40_RS03660 0.85 -1.7 724,122 + ABIE40_RS03660 0.85 -2.4 724,123 - ABIE40_RS03660 0.85 -3.3 724,123 - ABIE40_RS03660 0.85 -1.9 724,125 + ABIE40_RS03660 0.85 -4.2 724,126 - ABIE40_RS03660 0.85 -2.6 724,126 - ABIE40_RS03660 0.85 -2.5 724,127 + ABIE40_RS03660 0.85 -1.4 724,127 + ABIE40_RS03660 0.85 -1.7 724,128 - ABIE40_RS03660 0.85 -1.7 724,297 + -1.0 724,297 + -0.7 724,371 + ABIE40_RS03665 0.12 -1.4 724,372 - ABIE40_RS03665 0.12 -1.6 724,372 - ABIE40_RS03665 0.12 -3.2 724,372 - ABIE40_RS03665 0.12 -3.8 724,700 + ABIE40_RS03665 0.59 -0.7 724,701 - ABIE40_RS03665 0.59 -3.1 724,752 - ABIE40_RS03665 0.67 -2.5 724,752 - ABIE40_RS03665 0.67 -4.6 724,756 + ABIE40_RS03665 0.67 -2.4 724,756 + ABIE40_RS03665 0.67 -2.8 724,822 + ABIE40_RS03665 0.77 -0.0 725,040 + -0.7 725,040 + +2.4 725,040 + -0.2 725,041 - -0.6 725,041 - -0.2 725,041 - -0.1 725,041 - +0.1 725,063 - -2.8 725,063 - +2.2 725,069 + +0.4 725,070 - +0.1 725,079 + +0.5 725,079 + -1.4 725,080 - +0.4 725,080 - -0.4 725,080 - -0.2 725,080 - +0.2 725,130 + ABIE40_RS03670 0.16 -0.8 725,131 - ABIE40_RS03670 0.16 -2.1 725,131 - ABIE40_RS03670 0.16 +2.0 725,131 - ABIE40_RS03670 0.16 +0.9 725,131 - ABIE40_RS03670 0.16 +0.8 725,131 - ABIE40_RS03670 0.16 -0.7 725,131 - ABIE40_RS03670 0.16 -0.1 725,131 - ABIE40_RS03670 0.16 -0.3 725,137 + ABIE40_RS03670 0.18 -1.5 725,137 + ABIE40_RS03670 0.18 -0.1 725,137 + ABIE40_RS03670 0.18 -0.5 725,137 + ABIE40_RS03670 0.18 -1.2 725,138 - ABIE40_RS03670 0.18 -1.1 725,138 - ABIE40_RS03670 0.18 +0.2 725,138 - ABIE40_RS03670 0.18 -0.7 725,138 - ABIE40_RS03670 0.18 -0.1 725,138 - ABIE40_RS03670 0.18 -0.9 725,138 - ABIE40_RS03670 0.18 +0.6 725,138 - ABIE40_RS03670 0.18 -0.3 725,138 - ABIE40_RS03670 0.18 +0.3 725,138 - ABIE40_RS03670 0.18 +0.4 725,138 - ABIE40_RS03670 0.18 +1.6 725,212 + ABIE40_RS03670 0.35 +0.4 725,335 + ABIE40_RS03670 0.64 +2.2 725,335 + ABIE40_RS03670 0.64 +1.0 725,335 + ABIE40_RS03670 0.64 -2.2 725,335 + ABIE40_RS03670 0.64 +1.7 725,336 - ABIE40_RS03670 0.65 -1.0 725,477 + -0.5 725,478 - -2.0 725,492 + -1.0 725,492 + -0.4 725,492 + -0.2 725,492 + -0.7 725,492 + -0.4 725,493 - -1.6 725,493 - -0.3 725,538 + -2.9 725,538 + +0.4 725,539 - +0.3 725,652 + +0.3 725,652 + -0.4 725,652 + +0.7 725,652 + +0.1 725,652 + +0.7 725,652 + +0.1 725,652 + +0.3 725,653 - +3.7 725,754 + -2.0 725,755 - -0.7 725,755 - +0.1 725,755 - -2.1 725,755 - +0.5 725,829 + ABIE40_RS03675 0.20 -0.0 725,829 + ABIE40_RS03675 0.20 -0.3 725,829 + ABIE40_RS03675 0.20 -0.3 725,829 + ABIE40_RS03675 0.20 -2.5 725,830 - ABIE40_RS03675 0.20 -0.5 725,830 - ABIE40_RS03675 0.20 +0.5 725,830 - ABIE40_RS03675 0.20 -1.1 725,830 - ABIE40_RS03675 0.20 +0.4 725,830 - ABIE40_RS03675 0.20 -1.4 725,830 - ABIE40_RS03675 0.20 +0.5 725,896 + ABIE40_RS03675 0.30 +0.2 725,970 + ABIE40_RS03675 0.40 +0.3 725,970 + ABIE40_RS03675 0.40 -0.4 725,970 + ABIE40_RS03675 0.40 -0.7 725,970 + ABIE40_RS03675 0.40 -0.6 725,970 + ABIE40_RS03675 0.40 -0.0 725,971 - ABIE40_RS03675 0.40 +0.6 725,971 - ABIE40_RS03675 0.40 +0.6
Or see this region's nucleotide sequence