Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03085 and ABIE40_RS03090 are separated by 29 nucleotides ABIE40_RS03090 and ABIE40_RS03095 overlap by 4 nucleotides ABIE40_RS03095 and ABIE40_RS03100 overlap by 10 nucleotides ABIE40_RS03100 and ABIE40_RS03105 are separated by 48 nucleotides ABIE40_RS03105 and ABIE40_RS03110 are separated by 92 nucleotides
ABIE40_RS03085: ABIE40_RS03085 - flagellar hook-associated family protein, at 609,608 to 610,732
_RS03085
ABIE40_RS03090: ABIE40_RS03090 - flagellar biosynthesis regulator FlaF, at 610,762 to 611,109
_RS03090
ABIE40_RS03095: ABIE40_RS03095 - flagellar biosynthesis repressor FlbT, at 611,106 to 611,555
_RS03095
ABIE40_RS03100: ABIE40_RS03100 - flagellar hook assembly protein FlgD, at 611,546 to 612,031
_RS03100
ABIE40_RS03105: ABIE40_RS03105 - flagellar biosynthesis protein FliQ, at 612,080 to 612,346
_RS03105
ABIE40_RS03110: ABIE40_RS03110 - flagellar biosynthesis protein FlhA, at 612,439 to 614,526
_RS03110
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 610.682 kb on + strand at 610.682 kb on + strand at 610.683 kb on - strand at 610.743 kb on + strand at 610.747 kb on + strand at 610.747 kb on + strand at 610.748 kb on - strand at 610.748 kb on - strand at 610.765 kb on + strand at 610.765 kb on + strand at 610.766 kb on - strand at 610.766 kb on - strand at 610.777 kb on + strand at 610.882 kb on + strand, within ABIE40_RS03090 at 610.912 kb on + strand, within ABIE40_RS03090 at 611.059 kb on + strand, within ABIE40_RS03090 at 611.059 kb on + strand, within ABIE40_RS03090 at 611.059 kb on + strand, within ABIE40_RS03090 at 611.060 kb on - strand, within ABIE40_RS03090 at 611.060 kb on - strand, within ABIE40_RS03090 at 611.079 kb on + strand at 611.079 kb on + strand at 611.103 kb on + strand at 611.103 kb on + strand at 611.103 kb on + strand at 611.103 kb on + strand at 611.104 kb on - strand at 611.104 kb on - strand at 611.104 kb on - strand at 611.104 kb on - strand at 611.277 kb on + strand, within ABIE40_RS03095 at 611.277 kb on + strand, within ABIE40_RS03095 at 611.387 kb on + strand, within ABIE40_RS03095 at 611.466 kb on + strand, within ABIE40_RS03095 at 611.630 kb on + strand, within ABIE40_RS03100 at 611.630 kb on + strand, within ABIE40_RS03100 at 611.630 kb on + strand, within ABIE40_RS03100 at 611.630 kb on + strand, within ABIE40_RS03100 at 611.631 kb on - strand, within ABIE40_RS03100 at 611.635 kb on + strand, within ABIE40_RS03100 at 611.635 kb on + strand, within ABIE40_RS03100 at 611.692 kb on - strand, within ABIE40_RS03100 at 611.692 kb on - strand, within ABIE40_RS03100 at 611.758 kb on + strand, within ABIE40_RS03100 at 611.759 kb on - strand, within ABIE40_RS03100 at 611.759 kb on - strand, within ABIE40_RS03100 at 611.759 kb on - strand, within ABIE40_RS03100 at 611.810 kb on + strand, within ABIE40_RS03100 at 611.810 kb on + strand, within ABIE40_RS03100 at 611.810 kb on + strand, within ABIE40_RS03100 at 611.810 kb on + strand, within ABIE40_RS03100 at 611.811 kb on - strand, within ABIE40_RS03100 at 611.811 kb on - strand, within ABIE40_RS03100 at 611.811 kb on - strand, within ABIE40_RS03100 at 611.811 kb on - strand, within ABIE40_RS03100 at 611.811 kb on - strand, within ABIE40_RS03100 at 611.811 kb on - strand, within ABIE40_RS03100 at 611.811 kb on - strand, within ABIE40_RS03100 at 611.822 kb on + strand, within ABIE40_RS03100 at 611.822 kb on + strand, within ABIE40_RS03100 at 611.822 kb on + strand, within ABIE40_RS03100 at 611.822 kb on + strand, within ABIE40_RS03100 at 611.822 kb on + strand, within ABIE40_RS03100 at 611.822 kb on + strand, within ABIE40_RS03100 at 611.823 kb on - strand, within ABIE40_RS03100 at 611.823 kb on - strand, within ABIE40_RS03100 at 611.823 kb on - strand, within ABIE40_RS03100 at 611.877 kb on - strand, within ABIE40_RS03100 at 611.914 kb on + strand, within ABIE40_RS03100 at 611.999 kb on - strand at 612.029 kb on + strand at 612.029 kb on + strand at 612.029 kb on + strand at 612.029 kb on + strand at 612.030 kb on - strand at 612.030 kb on - strand at 612.030 kb on - strand at 612.030 kb on - strand at 612.030 kb on - strand at 612.030 kb on - strand at 612.066 kb on + strand at 612.079 kb on + strand at 612.080 kb on - strand at 612.373 kb on + strand at 612.373 kb on + strand at 612.373 kb on + strand at 612.373 kb on + strand at 612.373 kb on + strand at 612.374 kb on - strand at 612.374 kb on - strand at 612.390 kb on - strand at 612.438 kb on + strand at 612.439 kb on - strand at 612.458 kb on + strand at 612.520 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 610,682 + -1.4 610,682 + +0.4 610,683 - -0.1 610,743 + +2.3 610,747 + +0.2 610,747 + +0.6 610,748 - -1.2 610,748 - -0.1 610,765 + -0.7 610,765 + -0.4 610,766 - +0.4 610,766 - -1.8 610,777 + -0.4 610,882 + ABIE40_RS03090 0.34 +1.6 610,912 + ABIE40_RS03090 0.43 -0.6 611,059 + ABIE40_RS03090 0.85 +0.7 611,059 + ABIE40_RS03090 0.85 +0.4 611,059 + ABIE40_RS03090 0.85 -0.4 611,060 - ABIE40_RS03090 0.86 -1.2 611,060 - ABIE40_RS03090 0.86 +0.6 611,079 + -1.2 611,079 + +0.3 611,103 + +0.1 611,103 + +0.8 611,103 + +0.6 611,103 + -1.2 611,104 - -2.1 611,104 - -0.3 611,104 - -0.7 611,104 - -1.3 611,277 + ABIE40_RS03095 0.38 +0.2 611,277 + ABIE40_RS03095 0.38 +0.4 611,387 + ABIE40_RS03095 0.62 +2.6 611,466 + ABIE40_RS03095 0.80 -0.2 611,630 + ABIE40_RS03100 0.17 +0.0 611,630 + ABIE40_RS03100 0.17 -0.4 611,630 + ABIE40_RS03100 0.17 -0.8 611,630 + ABIE40_RS03100 0.17 +2.3 611,631 - ABIE40_RS03100 0.17 +0.5 611,635 + ABIE40_RS03100 0.18 +1.5 611,635 + ABIE40_RS03100 0.18 +2.5 611,692 - ABIE40_RS03100 0.30 +2.0 611,692 - ABIE40_RS03100 0.30 -0.0 611,758 + ABIE40_RS03100 0.44 -0.8 611,759 - ABIE40_RS03100 0.44 -0.8 611,759 - ABIE40_RS03100 0.44 -0.2 611,759 - ABIE40_RS03100 0.44 +0.4 611,810 + ABIE40_RS03100 0.54 +0.3 611,810 + ABIE40_RS03100 0.54 +0.1 611,810 + ABIE40_RS03100 0.54 +1.3 611,810 + ABIE40_RS03100 0.54 -0.6 611,811 - ABIE40_RS03100 0.55 +1.2 611,811 - ABIE40_RS03100 0.55 +1.8 611,811 - ABIE40_RS03100 0.55 +0.6 611,811 - ABIE40_RS03100 0.55 -0.3 611,811 - ABIE40_RS03100 0.55 +0.4 611,811 - ABIE40_RS03100 0.55 +0.2 611,811 - ABIE40_RS03100 0.55 -0.4 611,822 + ABIE40_RS03100 0.57 -0.4 611,822 + ABIE40_RS03100 0.57 +0.8 611,822 + ABIE40_RS03100 0.57 -0.4 611,822 + ABIE40_RS03100 0.57 +0.0 611,822 + ABIE40_RS03100 0.57 +0.6 611,822 + ABIE40_RS03100 0.57 -0.3 611,823 - ABIE40_RS03100 0.57 +0.2 611,823 - ABIE40_RS03100 0.57 +0.2 611,823 - ABIE40_RS03100 0.57 -1.0 611,877 - ABIE40_RS03100 0.68 +0.6 611,914 + ABIE40_RS03100 0.76 +1.6 611,999 - +0.8 612,029 + +1.4 612,029 + -1.4 612,029 + +0.4 612,029 + -0.1 612,030 - +3.6 612,030 - +0.4 612,030 - +0.4 612,030 - +0.2 612,030 - -0.6 612,030 - +2.2 612,066 + +2.2 612,079 + -0.8 612,080 - -0.6 612,373 + -2.2 612,373 + -1.0 612,373 + -1.2 612,373 + -1.0 612,373 + -0.0 612,374 - -1.6 612,374 - -1.4 612,390 - +2.1 612,438 + -0.5 612,439 - -0.4 612,458 + -1.0 612,520 - -0.3
Or see this region's nucleotide sequence