Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01490 and ABIE40_RS01495 overlap by 14 nucleotides ABIE40_RS01495 and ABIE40_RS01500 are separated by 73 nucleotides
ABIE40_RS01490: ABIE40_RS01490 - class II glutamine amidotransferase, at 293,117 to 293,926
_RS01490
ABIE40_RS01495: ABIE40_RS01495 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 293,913 to 295,124
_RS01495
ABIE40_RS01500: ABIE40_RS01500 - DMT family transporter, at 295,198 to 296,121
_RS01500
Position (kb) 293
294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 293.002 kb on + strand at 293.036 kb on + strand at 293.037 kb on - strand at 293.040 kb on + strand at 293.040 kb on + strand at 293.041 kb on - strand at 293.041 kb on - strand at 293.041 kb on - strand at 293.153 kb on + strand at 293.261 kb on + strand, within ABIE40_RS01490 at 293.261 kb on + strand, within ABIE40_RS01490 at 293.297 kb on - strand, within ABIE40_RS01490 at 293.299 kb on - strand, within ABIE40_RS01490 at 293.443 kb on + strand, within ABIE40_RS01490 at 293.444 kb on - strand, within ABIE40_RS01490 at 293.444 kb on - strand, within ABIE40_RS01490 at 293.702 kb on + strand, within ABIE40_RS01490 at 293.702 kb on + strand, within ABIE40_RS01490 at 293.703 kb on - strand, within ABIE40_RS01490 at 293.703 kb on - strand, within ABIE40_RS01490 at 293.744 kb on + strand, within ABIE40_RS01490 at 293.744 kb on + strand, within ABIE40_RS01490 at 293.744 kb on + strand, within ABIE40_RS01490 at 293.745 kb on - strand, within ABIE40_RS01490 at 293.745 kb on - strand, within ABIE40_RS01490 at 293.745 kb on - strand, within ABIE40_RS01490 at 293.914 kb on + strand at 293.914 kb on + strand at 293.914 kb on + strand at 293.914 kb on + strand at 293.915 kb on - strand at 293.915 kb on - strand at 293.915 kb on - strand at 293.915 kb on - strand at 293.916 kb on + strand at 293.916 kb on + strand at 293.917 kb on - strand at 293.917 kb on - strand at 293.917 kb on - strand at 293.917 kb on - strand at 293.917 kb on - strand at 293.917 kb on - strand at 295.133 kb on - strand at 295.162 kb on - strand at 295.162 kb on - strand at 295.619 kb on + strand, within ABIE40_RS01500 at 295.619 kb on + strand, within ABIE40_RS01500 at 295.619 kb on + strand, within ABIE40_RS01500 at 295.619 kb on + strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.620 kb on - strand, within ABIE40_RS01500 at 295.871 kb on + strand, within ABIE40_RS01500 at 295.898 kb on + strand, within ABIE40_RS01500 at 295.898 kb on + strand, within ABIE40_RS01500 at 295.899 kb on - strand, within ABIE40_RS01500 at 295.899 kb on - strand, within ABIE40_RS01500 at 296.009 kb on + strand, within ABIE40_RS01500
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 293,002 + +0.2 293,036 + -0.5 293,037 - +0.1 293,040 + -0.9 293,040 + +1.3 293,041 - +0.8 293,041 - -0.2 293,041 - -1.2 293,153 + +0.3 293,261 + ABIE40_RS01490 0.18 -0.7 293,261 + ABIE40_RS01490 0.18 -0.7 293,297 - ABIE40_RS01490 0.22 -1.7 293,299 - ABIE40_RS01490 0.22 -0.7 293,443 + ABIE40_RS01490 0.40 +0.4 293,444 - ABIE40_RS01490 0.40 -1.5 293,444 - ABIE40_RS01490 0.40 -2.1 293,702 + ABIE40_RS01490 0.72 -1.7 293,702 + ABIE40_RS01490 0.72 -0.4 293,703 - ABIE40_RS01490 0.72 -0.9 293,703 - ABIE40_RS01490 0.72 +1.8 293,744 + ABIE40_RS01490 0.77 -0.8 293,744 + ABIE40_RS01490 0.77 +0.6 293,744 + ABIE40_RS01490 0.77 -0.2 293,745 - ABIE40_RS01490 0.78 -0.3 293,745 - ABIE40_RS01490 0.78 -0.1 293,745 - ABIE40_RS01490 0.78 -0.5 293,914 + -0.1 293,914 + +0.2 293,914 + +0.9 293,914 + -0.5 293,915 - -0.2 293,915 - -1.0 293,915 - -0.4 293,915 - -0.6 293,916 + +0.4 293,916 + -0.5 293,917 - +0.1 293,917 - +0.4 293,917 - +0.3 293,917 - +0.9 293,917 - -1.2 293,917 - +0.7 295,133 - +1.5 295,162 - -0.4 295,162 - +0.4 295,619 + ABIE40_RS01500 0.46 -0.1 295,619 + ABIE40_RS01500 0.46 +1.9 295,619 + ABIE40_RS01500 0.46 +0.6 295,619 + ABIE40_RS01500 0.46 -0.7 295,620 - ABIE40_RS01500 0.46 +0.2 295,620 - ABIE40_RS01500 0.46 -1.8 295,620 - ABIE40_RS01500 0.46 -0.0 295,620 - ABIE40_RS01500 0.46 +0.7 295,620 - ABIE40_RS01500 0.46 -1.2 295,620 - ABIE40_RS01500 0.46 -1.9 295,620 - ABIE40_RS01500 0.46 -0.4 295,620 - ABIE40_RS01500 0.46 -0.0 295,620 - ABIE40_RS01500 0.46 -0.3 295,620 - ABIE40_RS01500 0.46 +0.6 295,871 + ABIE40_RS01500 0.73 -1.1 295,898 + ABIE40_RS01500 0.76 +1.0 295,898 + ABIE40_RS01500 0.76 -0.8 295,899 - ABIE40_RS01500 0.76 -1.5 295,899 - ABIE40_RS01500 0.76 +0.1 296,009 + ABIE40_RS01500 0.88 +0.4
Or see this region's nucleotide sequence