Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01480

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01475 and ABIE40_RS01480 are separated by 129 nucleotidesABIE40_RS01480 and ABIE40_RS01485 overlap by 4 nucleotides ABIE40_RS01475: ABIE40_RS01475 - carboxypeptidase, at 288,940 to 290,433 _RS01475 ABIE40_RS01480: ABIE40_RS01480 - MFS transporter, at 290,563 to 291,852 _RS01480 ABIE40_RS01485: ABIE40_RS01485 - FadR/GntR family transcriptional regulator, at 291,849 to 292,526 _RS01485 Position (kb) 290 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 289.608 kb on - strand, within ABIE40_RS01475at 289.788 kb on + strand, within ABIE40_RS01475at 289.788 kb on + strand, within ABIE40_RS01475at 289.788 kb on + strand, within ABIE40_RS01475at 289.788 kb on + strand, within ABIE40_RS01475at 289.789 kb on - strand, within ABIE40_RS01475at 289.789 kb on - strand, within ABIE40_RS01475at 289.844 kb on + strand, within ABIE40_RS01475at 289.844 kb on + strand, within ABIE40_RS01475at 289.844 kb on + strand, within ABIE40_RS01475at 289.844 kb on + strand, within ABIE40_RS01475at 289.844 kb on + strand, within ABIE40_RS01475at 289.844 kb on + strand, within ABIE40_RS01475at 289.844 kb on + strand, within ABIE40_RS01475at 289.845 kb on - strand, within ABIE40_RS01475at 289.845 kb on - strand, within ABIE40_RS01475at 289.845 kb on - strand, within ABIE40_RS01475at 289.845 kb on - strand, within ABIE40_RS01475at 289.845 kb on - strand, within ABIE40_RS01475at 289.845 kb on - strand, within ABIE40_RS01475at 289.862 kb on + strand, within ABIE40_RS01475at 289.863 kb on - strand, within ABIE40_RS01475at 289.898 kb on + strand, within ABIE40_RS01475at 289.899 kb on - strand, within ABIE40_RS01475at 289.946 kb on + strand, within ABIE40_RS01475at 289.946 kb on + strand, within ABIE40_RS01475at 289.946 kb on + strand, within ABIE40_RS01475at 289.946 kb on + strand, within ABIE40_RS01475at 289.946 kb on + strand, within ABIE40_RS01475at 289.946 kb on + strand, within ABIE40_RS01475at 289.946 kb on + strand, within ABIE40_RS01475at 289.947 kb on - strand, within ABIE40_RS01475at 289.947 kb on - strand, within ABIE40_RS01475at 289.949 kb on + strand, within ABIE40_RS01475at 289.949 kb on + strand, within ABIE40_RS01475at 289.949 kb on + strand, within ABIE40_RS01475at 289.950 kb on - strand, within ABIE40_RS01475at 289.950 kb on - strand, within ABIE40_RS01475at 289.950 kb on - strand, within ABIE40_RS01475at 289.950 kb on - strand, within ABIE40_RS01475at 290.064 kb on - strand, within ABIE40_RS01475at 290.203 kb on - strand, within ABIE40_RS01475at 290.204 kb on + strand, within ABIE40_RS01475at 290.204 kb on - strand, within ABIE40_RS01475at 290.205 kb on - strand, within ABIE40_RS01475at 290.213 kb on + strand, within ABIE40_RS01475at 290.213 kb on + strand, within ABIE40_RS01475at 290.213 kb on + strand, within ABIE40_RS01475at 290.213 kb on + strand, within ABIE40_RS01475at 290.214 kb on - strand, within ABIE40_RS01475at 290.214 kb on - strand, within ABIE40_RS01475at 290.214 kb on - strand, within ABIE40_RS01475at 290.214 kb on - strand, within ABIE40_RS01475at 290.214 kb on - strand, within ABIE40_RS01475at 290.277 kb on + strand, within ABIE40_RS01475at 290.277 kb on + strand, within ABIE40_RS01475at 290.277 kb on + strand, within ABIE40_RS01475at 290.278 kb on - strand, within ABIE40_RS01475at 290.279 kb on + strand, within ABIE40_RS01475at 290.280 kb on - strand, within ABIE40_RS01475at 290.280 kb on - strand, within ABIE40_RS01475at 290.280 kb on - strand, within ABIE40_RS01475at 290.397 kb on + strandat 290.398 kb on - strandat 290.471 kb on + strandat 290.471 kb on + strandat 290.471 kb on + strandat 290.524 kb on + strandat 290.524 kb on + strandat 290.524 kb on + strandat 290.524 kb on + strandat 290.524 kb on + strandat 290.524 kb on + strandat 290.525 kb on - strandat 290.525 kb on - strandat 290.525 kb on - strandat 290.525 kb on - strandat 290.525 kb on - strandat 290.525 kb on - strandat 290.525 kb on - strandat 290.525 kb on - strandat 290.525 kb on - strandat 290.733 kb on - strand, within ABIE40_RS01480at 290.956 kb on + strand, within ABIE40_RS01480at 290.957 kb on - strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.087 kb on - strand, within ABIE40_RS01480at 291.087 kb on - strand, within ABIE40_RS01480at 291.344 kb on + strand, within ABIE40_RS01480at 291.344 kb on + strand, within ABIE40_RS01480at 291.345 kb on - strand, within ABIE40_RS01480at 291.706 kb on + strand, within ABIE40_RS01480at 291.706 kb on + strand, within ABIE40_RS01480at 291.706 kb on + strand, within ABIE40_RS01480at 291.707 kb on - strand, within ABIE40_RS01480at 291.729 kb on + strandat 291.730 kb on - strandat 291.777 kb on + strandat 291.954 kb on - strand, within ABIE40_RS01485at 291.954 kb on - strand, within ABIE40_RS01485at 291.971 kb on + strand, within ABIE40_RS01485at 291.971 kb on + strand, within ABIE40_RS01485at 291.972 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.138 kb on + strand, within ABIE40_RS01485at 292.138 kb on + strand, within ABIE40_RS01485at 292.138 kb on + strand, within ABIE40_RS01485at 292.138 kb on + strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.345 kb on + strand, within ABIE40_RS01485at 292.345 kb on + strand, within ABIE40_RS01485at 292.346 kb on - strand, within ABIE40_RS01485at 292.346 kb on - strand, within ABIE40_RS01485at 292.346 kb on - strand, within ABIE40_RS01485at 292.533 kb on - strandat 292.539 kb on - strandat 292.564 kb on - strandat 292.675 kb on + strandat 292.676 kb on - strandat 292.676 kb on - strandat 292.735 kb on - strandat 292.754 kb on + strandat 292.754 kb on + strandat 292.754 kb on + strandat 292.755 kb on - strandat 292.755 kb on - strandat 292.755 kb on - strandat 292.755 kb on - strandat 292.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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289,608 - ABIE40_RS01475 0.45 -0.0
289,788 + ABIE40_RS01475 0.57 -0.6
289,788 + ABIE40_RS01475 0.57 -2.9
289,788 + ABIE40_RS01475 0.57 -0.4
289,788 + ABIE40_RS01475 0.57 -0.4
289,789 - ABIE40_RS01475 0.57 +1.6
289,789 - ABIE40_RS01475 0.57 -1.5
289,844 + ABIE40_RS01475 0.61 +0.5
289,844 + ABIE40_RS01475 0.61 -1.9
289,844 + ABIE40_RS01475 0.61 -0.9
289,844 + ABIE40_RS01475 0.61 -1.2
289,844 + ABIE40_RS01475 0.61 +1.1
289,844 + ABIE40_RS01475 0.61 -2.2
289,844 + ABIE40_RS01475 0.61 -0.4
289,845 - ABIE40_RS01475 0.61 +0.3
289,845 - ABIE40_RS01475 0.61 -1.9
289,845 - ABIE40_RS01475 0.61 +0.6
289,845 - ABIE40_RS01475 0.61 +0.8
289,845 - ABIE40_RS01475 0.61 +0.1
289,845 - ABIE40_RS01475 0.61 -2.0
289,862 + ABIE40_RS01475 0.62 +0.8
289,863 - ABIE40_RS01475 0.62 -0.8
289,898 + ABIE40_RS01475 0.64 -0.2
289,899 - ABIE40_RS01475 0.64 -2.1
289,946 + ABIE40_RS01475 0.67 +0.2
289,946 + ABIE40_RS01475 0.67 +1.0
289,946 + ABIE40_RS01475 0.67 -0.4
289,946 + ABIE40_RS01475 0.67 -0.3
289,946 + ABIE40_RS01475 0.67 -0.8
289,946 + ABIE40_RS01475 0.67 -0.3
289,946 + ABIE40_RS01475 0.67 -0.0
289,947 - ABIE40_RS01475 0.67 +0.5
289,947 - ABIE40_RS01475 0.67 -0.4
289,949 + ABIE40_RS01475 0.68 -0.2
289,949 + ABIE40_RS01475 0.68 -0.5
289,949 + ABIE40_RS01475 0.68 +0.3
289,950 - ABIE40_RS01475 0.68 -0.1
289,950 - ABIE40_RS01475 0.68 -0.3
289,950 - ABIE40_RS01475 0.68 +0.3
289,950 - ABIE40_RS01475 0.68 -1.3
290,064 - ABIE40_RS01475 0.75 +0.3
290,203 - ABIE40_RS01475 0.85 -0.0
290,204 + ABIE40_RS01475 0.85 +1.1
290,204 - ABIE40_RS01475 0.85 -0.2
290,205 - ABIE40_RS01475 0.85 +2.1
290,213 + ABIE40_RS01475 0.85 +1.2
290,213 + ABIE40_RS01475 0.85 -0.9
290,213 + ABIE40_RS01475 0.85 -0.3
290,213 + ABIE40_RS01475 0.85 -0.2
290,214 - ABIE40_RS01475 0.85 -0.3
290,214 - ABIE40_RS01475 0.85 -0.8
290,214 - ABIE40_RS01475 0.85 +1.8
290,214 - ABIE40_RS01475 0.85 +0.7
290,214 - ABIE40_RS01475 0.85 -0.1
290,277 + ABIE40_RS01475 0.89 -0.4
290,277 + ABIE40_RS01475 0.89 -0.3
290,277 + ABIE40_RS01475 0.89 -0.8
290,278 - ABIE40_RS01475 0.90 -0.6
290,279 + ABIE40_RS01475 0.90 -0.3
290,280 - ABIE40_RS01475 0.90 -0.2
290,280 - ABIE40_RS01475 0.90 -1.2
290,280 - ABIE40_RS01475 0.90 -1.2
290,397 + -1.3
290,398 - +0.1
290,471 + +0.2
290,471 + -0.1
290,471 + +1.0
290,524 + -0.4
290,524 + +0.0
290,524 + +0.1
290,524 + -0.2
290,524 + -0.7
290,524 + -1.6
290,525 - +0.2
290,525 - -0.1
290,525 - +0.1
290,525 - -1.4
290,525 - -0.0
290,525 - +0.7
290,525 - +0.2
290,525 - -2.4
290,525 - -0.1
290,733 - ABIE40_RS01480 0.13 -1.2
290,956 + ABIE40_RS01480 0.30 +0.0
290,957 - ABIE40_RS01480 0.31 -1.2
291,086 + ABIE40_RS01480 0.41 -0.8
291,086 + ABIE40_RS01480 0.41 +0.3
291,086 + ABIE40_RS01480 0.41 +0.0
291,086 + ABIE40_RS01480 0.41 -1.2
291,086 + ABIE40_RS01480 0.41 +1.4
291,087 - ABIE40_RS01480 0.41 +0.2
291,087 - ABIE40_RS01480 0.41 +0.5
291,344 + ABIE40_RS01480 0.61 -1.2
291,344 + ABIE40_RS01480 0.61 -0.4
291,345 - ABIE40_RS01480 0.61 +0.6
291,706 + ABIE40_RS01480 0.89 +1.0
291,706 + ABIE40_RS01480 0.89 -0.2
291,706 + ABIE40_RS01480 0.89 -2.2
291,707 - ABIE40_RS01480 0.89 -0.5
291,729 + +1.3
291,730 - -1.7
291,777 + +2.0
291,954 - ABIE40_RS01485 0.15 +0.1
291,954 - ABIE40_RS01485 0.15 -0.0
291,971 + ABIE40_RS01485 0.18 +1.6
291,971 + ABIE40_RS01485 0.18 +0.8
291,972 - ABIE40_RS01485 0.18 -1.9
292,043 - ABIE40_RS01485 0.29 -0.3
292,043 - ABIE40_RS01485 0.29 +0.2
292,043 - ABIE40_RS01485 0.29 +0.6
292,043 - ABIE40_RS01485 0.29 +0.6
292,043 - ABIE40_RS01485 0.29 -1.0
292,138 + ABIE40_RS01485 0.43 -0.1
292,138 + ABIE40_RS01485 0.43 -0.9
292,138 + ABIE40_RS01485 0.43 +0.3
292,138 + ABIE40_RS01485 0.43 -0.5
292,139 - ABIE40_RS01485 0.43 -1.4
292,139 - ABIE40_RS01485 0.43 -0.3
292,139 - ABIE40_RS01485 0.43 +3.4
292,139 - ABIE40_RS01485 0.43 +0.5
292,139 - ABIE40_RS01485 0.43 +0.9
292,139 - ABIE40_RS01485 0.43 -0.7
292,139 - ABIE40_RS01485 0.43 +0.4
292,139 - ABIE40_RS01485 0.43 +0.8
292,315 + ABIE40_RS01485 0.69 +0.0
292,315 + ABIE40_RS01485 0.69 -0.8
292,315 + ABIE40_RS01485 0.69 -1.2
292,315 + ABIE40_RS01485 0.69 -1.1
292,315 + ABIE40_RS01485 0.69 -1.2
292,315 + ABIE40_RS01485 0.69 +0.8
292,315 + ABIE40_RS01485 0.69 +1.4
292,315 + ABIE40_RS01485 0.69 -0.7
292,315 + ABIE40_RS01485 0.69 +0.9
292,316 - ABIE40_RS01485 0.69 -0.4
292,316 - ABIE40_RS01485 0.69 +0.4
292,316 - ABIE40_RS01485 0.69 -0.1
292,316 - ABIE40_RS01485 0.69 +0.1
292,316 - ABIE40_RS01485 0.69 +1.6
292,316 - ABIE40_RS01485 0.69 -0.1
292,316 - ABIE40_RS01485 0.69 -0.3
292,316 - ABIE40_RS01485 0.69 +0.1
292,316 - ABIE40_RS01485 0.69 -0.9
292,345 + ABIE40_RS01485 0.73 -0.1
292,345 + ABIE40_RS01485 0.73 -0.9
292,346 - ABIE40_RS01485 0.73 +0.4
292,346 - ABIE40_RS01485 0.73 -0.5
292,346 - ABIE40_RS01485 0.73 +0.3
292,533 - -0.5
292,539 - -0.1
292,564 - -0.2
292,675 + +0.6
292,676 - +0.6
292,676 - +0.3
292,735 - +0.8
292,754 + -0.8
292,754 + -1.0
292,754 + -1.0
292,755 - -1.9
292,755 - -0.2
292,755 - +0.0
292,755 - +0.0
292,755 - -1.6

Or see this region's nucleotide sequence