Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29140 and ABID97_RS29145 are separated by 24 nucleotides ABID97_RS29145 and ABID97_RS29150 are separated by 0 nucleotides ABID97_RS29150 and ABID97_RS29155 are separated by 4 nucleotides ABID97_RS29155 and ABID97_RS29160 are separated by 30 nucleotides
ABID97_RS29140: ABID97_RS29140 - MarR family transcriptional regulator, at 746,624 to 747,160
_RS29140
ABID97_RS29145: ABID97_RS29145 - LysR family transcriptional regulator, at 747,185 to 748,138
_RS29145
ABID97_RS29150: ABID97_RS29150 - maleylacetate reductase, at 748,139 to 749,200
_RS29150
ABID97_RS29155: ABID97_RS29155 - intradiol ring-cleavage dioxygenase, at 749,205 to 750,074
_RS29155
ABID97_RS29160: ABID97_RS29160 - amidohydrolase family protein, at 750,105 to 751,088
_RS29160
Position (kb)
748
749
750 Strain fitness (log2 ratio)
-1
0
1 at 747.236 kb on + strand at 747.668 kb on + strand, within ABID97_RS29145 at 747.668 kb on + strand, within ABID97_RS29145 at 748.662 kb on + strand, within ABID97_RS29150 at 748.819 kb on - strand, within ABID97_RS29150 at 749.206 kb on + strand at 749.252 kb on - strand at 749.359 kb on + strand, within ABID97_RS29155 at 749.503 kb on + strand, within ABID97_RS29155 at 749.762 kb on - strand, within ABID97_RS29155
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 747,236 + -1.6 747,668 + ABID97_RS29145 0.51 -0.1 747,668 + ABID97_RS29145 0.51 -0.6 748,662 + ABID97_RS29150 0.49 -0.8 748,819 - ABID97_RS29150 0.64 -1.0 749,206 + -0.1 749,252 - +0.1 749,359 + ABID97_RS29155 0.18 -0.5 749,503 + ABID97_RS29155 0.34 -0.1 749,762 - ABID97_RS29155 0.64 -0.5
Or see this region's nucleotide sequence