Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29150

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29140 and ABID97_RS29145 are separated by 24 nucleotidesABID97_RS29145 and ABID97_RS29150 are separated by 0 nucleotidesABID97_RS29150 and ABID97_RS29155 are separated by 4 nucleotidesABID97_RS29155 and ABID97_RS29160 are separated by 30 nucleotides ABID97_RS29140: ABID97_RS29140 - MarR family transcriptional regulator, at 746,624 to 747,160 _RS29140 ABID97_RS29145: ABID97_RS29145 - LysR family transcriptional regulator, at 747,185 to 748,138 _RS29145 ABID97_RS29150: ABID97_RS29150 - maleylacetate reductase, at 748,139 to 749,200 _RS29150 ABID97_RS29155: ABID97_RS29155 - intradiol ring-cleavage dioxygenase, at 749,205 to 750,074 _RS29155 ABID97_RS29160: ABID97_RS29160 - amidohydrolase family protein, at 750,105 to 751,088 _RS29160 Position (kb) 748 749 750Strain fitness (log2 ratio) -1 0 1at 747.236 kb on + strandat 747.668 kb on + strand, within ABID97_RS29145at 747.668 kb on + strand, within ABID97_RS29145at 748.662 kb on + strand, within ABID97_RS29150at 748.819 kb on - strand, within ABID97_RS29150at 749.206 kb on + strandat 749.252 kb on - strandat 749.359 kb on + strand, within ABID97_RS29155at 749.503 kb on + strand, within ABID97_RS29155at 749.762 kb on - strand, within ABID97_RS29155

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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747,236 + -1.6
747,668 + ABID97_RS29145 0.51 -0.1
747,668 + ABID97_RS29145 0.51 -0.6
748,662 + ABID97_RS29150 0.49 -0.8
748,819 - ABID97_RS29150 0.64 -1.0
749,206 + -0.1
749,252 - +0.1
749,359 + ABID97_RS29155 0.18 -0.5
749,503 + ABID97_RS29155 0.34 -0.1
749,762 - ABID97_RS29155 0.64 -0.5

Or see this region's nucleotide sequence