Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26170 and ABID97_RS26175 are separated by 215 nucleotides ABID97_RS26175 and ABID97_RS26180 are separated by 261 nucleotides ABID97_RS26180 and ABID97_RS26185 are separated by 86 nucleotides ABID97_RS26185 and ABID97_RS26190 are separated by 127 nucleotides
ABID97_RS26170: ABID97_RS26170 - ATP-binding protein, at 159,356 to 161,425
_RS26170
ABID97_RS26175: ABID97_RS26175 - phage protein NinX family protein, at 161,641 to 162,066
_RS26175
ABID97_RS26180: ABID97_RS26180 - hypothetical protein, at 162,328 to 162,543
_RS26180
ABID97_RS26185: ABID97_RS26185 - SDR family NAD(P)-dependent oxidoreductase, at 162,630 to 162,773
_RS26185
ABID97_RS26190: ABID97_RS26190 - type II toxin-antitoxin system HipA family toxin, at 162,901 to 164,223
_RS26190
Position (kb) 161
162
163 Strain fitness (log2 ratio) -1
0
1 at 161.100 kb on + strand, within ABID97_RS26170 at 161.100 kb on + strand, within ABID97_RS26170 at 161.101 kb on - strand, within ABID97_RS26170 at 161.101 kb on - strand, within ABID97_RS26170 at 161.157 kb on + strand, within ABID97_RS26170 at 161.238 kb on + strand at 161.481 kb on - strand at 161.716 kb on + strand, within ABID97_RS26175 at 161.738 kb on - strand, within ABID97_RS26175 at 161.738 kb on - strand, within ABID97_RS26175 at 161.740 kb on + strand, within ABID97_RS26175 at 161.741 kb on - strand, within ABID97_RS26175 at 161.741 kb on - strand, within ABID97_RS26175 at 161.885 kb on - strand, within ABID97_RS26175 at 161.993 kb on - strand, within ABID97_RS26175 at 162.052 kb on - strand at 162.065 kb on - strand at 162.221 kb on + strand at 162.222 kb on - strand at 162.528 kb on + strand at 162.529 kb on - strand at 162.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 161,100 + ABID97_RS26170 0.84 -0.8 161,100 + ABID97_RS26170 0.84 +0.3 161,101 - ABID97_RS26170 0.84 -0.2 161,101 - ABID97_RS26170 0.84 +0.5 161,157 + ABID97_RS26170 0.87 +0.4 161,238 + +0.0 161,481 - +0.4 161,716 + ABID97_RS26175 0.18 -0.4 161,738 - ABID97_RS26175 0.23 +0.3 161,738 - ABID97_RS26175 0.23 +0.4 161,740 + ABID97_RS26175 0.23 +0.3 161,741 - ABID97_RS26175 0.23 +0.7 161,741 - ABID97_RS26175 0.23 +0.4 161,885 - ABID97_RS26175 0.57 -0.2 161,993 - ABID97_RS26175 0.83 +0.3 162,052 - -0.0 162,065 - +0.0 162,221 + -0.0 162,222 - -0.2 162,528 + +0.0 162,529 - +0.2 162,542 - +0.2
Or see this region's nucleotide sequence