Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25400

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25390 and ABID97_RS25395 are separated by 325 nucleotidesABID97_RS25395 and ABID97_RS25400 are separated by 29 nucleotidesABID97_RS25400 and ABID97_RS25405 are separated by 79 nucleotides ABID97_RS25390: ABID97_RS25390 - 23S ribosomal RNA, at 5,260,455 to 5,263,328 _RS25390 ABID97_RS25395: ABID97_RS25395 - tRNA-Ala, at 5,263,654 to 5,263,729 _RS25395 ABID97_RS25400: ABID97_RS25400 - tRNA-Ile, at 5,263,759 to 5,263,835 _RS25400 ABID97_RS25405: ABID97_RS25405 - 16S ribosomal RNA, at 5,263,915 to 5,265,449 _RS25405 Position (kb) 5263 5264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 5262.767 kb on - strandat 5262.791 kb on - strand, within ABID97_RS25390at 5262.791 kb on - strand, within ABID97_RS25390at 5262.811 kb on - strand, within ABID97_RS25390at 5262.832 kb on - strand, within ABID97_RS25390at 5262.832 kb on - strand, within ABID97_RS25390at 5262.879 kb on - strand, within ABID97_RS25390at 5262.879 kb on - strand, within ABID97_RS25390at 5262.904 kb on - strand, within ABID97_RS25390at 5262.904 kb on - strand, within ABID97_RS25390at 5262.904 kb on - strand, within ABID97_RS25390at 5262.962 kb on - strand, within ABID97_RS25390at 5262.972 kb on - strand, within ABID97_RS25390at 5262.980 kb on - strand, within ABID97_RS25390at 5263.047 kb on - strandat 5263.059 kb on - strandat 5263.131 kb on - strandat 5263.131 kb on - strandat 5263.171 kb on - strandat 5263.171 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.175 kb on - strandat 5263.234 kb on - strandat 5263.257 kb on - strandat 5263.267 kb on - strandat 5263.331 kb on - strandat 5263.333 kb on - strandat 5263.377 kb on - strandat 5263.377 kb on - strandat 5263.403 kb on - strandat 5263.496 kb on - strandat 5263.644 kb on - strandat 5263.652 kb on - strandat 5263.652 kb on - strandat 5263.722 kb on - strandat 5263.722 kb on - strandat 5263.769 kb on - strand, within ABID97_RS25400at 5263.769 kb on - strand, within ABID97_RS25400at 5263.769 kb on - strand, within ABID97_RS25400at 5263.769 kb on - strand, within ABID97_RS25400at 5263.799 kb on - strand, within ABID97_RS25400at 5263.799 kb on - strand, within ABID97_RS25400at 5263.815 kb on - strand, within ABID97_RS25400at 5263.828 kb on - strandat 5263.828 kb on - strandat 5263.879 kb on - strandat 5263.898 kb on - strandat 5264.017 kb on - strandat 5264.017 kb on - strandat 5264.017 kb on - strandat 5264.021 kb on - strandat 5264.064 kb on - strandat 5264.064 kb on - strandat 5264.064 kb on - strandat 5264.081 kb on - strand, within ABID97_RS25405at 5264.081 kb on - strand, within ABID97_RS25405at 5264.081 kb on - strand, within ABID97_RS25405at 5264.081 kb on - strand, within ABID97_RS25405at 5264.081 kb on - strand, within ABID97_RS25405at 5264.109 kb on - strand, within ABID97_RS25405at 5264.112 kb on - strand, within ABID97_RS25405at 5264.159 kb on - strand, within ABID97_RS25405at 5264.171 kb on - strand, within ABID97_RS25405at 5264.179 kb on - strand, within ABID97_RS25405at 5264.179 kb on - strand, within ABID97_RS25405at 5264.179 kb on - strand, within ABID97_RS25405at 5264.179 kb on - strand, within ABID97_RS25405at 5264.179 kb on - strand, within ABID97_RS25405at 5264.179 kb on - strand, within ABID97_RS25405at 5264.179 kb on - strand, within ABID97_RS25405at 5264.179 kb on - strand, within ABID97_RS25405at 5264.222 kb on - strand, within ABID97_RS25405at 5264.222 kb on - strand, within ABID97_RS25405at 5264.222 kb on - strand, within ABID97_RS25405at 5264.222 kb on - strand, within ABID97_RS25405at 5264.222 kb on - strand, within ABID97_RS25405at 5264.243 kb on - strand, within ABID97_RS25405at 5264.243 kb on - strand, within ABID97_RS25405at 5264.243 kb on - strand, within ABID97_RS25405at 5264.243 kb on - strand, within ABID97_RS25405at 5264.243 kb on - strand, within ABID97_RS25405at 5264.243 kb on - strand, within ABID97_RS25405at 5264.243 kb on - strand, within ABID97_RS25405at 5264.307 kb on - strand, within ABID97_RS25405at 5264.307 kb on - strand, within ABID97_RS25405at 5264.326 kb on - strand, within ABID97_RS25405at 5264.326 kb on - strand, within ABID97_RS25405at 5264.326 kb on - strand, within ABID97_RS25405at 5264.326 kb on - strand, within ABID97_RS25405at 5264.326 kb on - strand, within ABID97_RS25405at 5264.326 kb on - strand, within ABID97_RS25405at 5264.326 kb on - strand, within ABID97_RS25405at 5264.333 kb on - strand, within ABID97_RS25405at 5264.333 kb on - strand, within ABID97_RS25405at 5264.333 kb on - strand, within ABID97_RS25405at 5264.364 kb on - strand, within ABID97_RS25405at 5264.364 kb on - strand, within ABID97_RS25405at 5264.435 kb on - strand, within ABID97_RS25405at 5264.458 kb on - strand, within ABID97_RS25405at 5264.458 kb on - strand, within ABID97_RS25405at 5264.458 kb on - strand, within ABID97_RS25405at 5264.458 kb on - strand, within ABID97_RS25405at 5264.566 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.667 kb on - strand, within ABID97_RS25405at 5264.708 kb on - strand, within ABID97_RS25405at 5264.708 kb on - strand, within ABID97_RS25405at 5264.708 kb on - strand, within ABID97_RS25405at 5264.751 kb on - strand, within ABID97_RS25405at 5264.751 kb on - strand, within ABID97_RS25405at 5264.751 kb on - strand, within ABID97_RS25405at 5264.755 kb on - strand, within ABID97_RS25405at 5264.755 kb on - strand, within ABID97_RS25405at 5264.770 kb on - strand, within ABID97_RS25405

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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5,262,767 - +4.4
5,262,791 - ABID97_RS25390 0.81 +3.8
5,262,791 - ABID97_RS25390 0.81 +3.3
5,262,811 - ABID97_RS25390 0.82 +4.4
5,262,832 - ABID97_RS25390 0.83 +4.1
5,262,832 - ABID97_RS25390 0.83 +4.4
5,262,879 - ABID97_RS25390 0.84 +3.6
5,262,879 - ABID97_RS25390 0.84 +3.5
5,262,904 - ABID97_RS25390 0.85 +4.8
5,262,904 - ABID97_RS25390 0.85 +4.7
5,262,904 - ABID97_RS25390 0.85 +3.7
5,262,962 - ABID97_RS25390 0.87 +3.4
5,262,972 - ABID97_RS25390 0.88 +3.5
5,262,980 - ABID97_RS25390 0.88 +3.5
5,263,047 - +4.4
5,263,059 - +3.5
5,263,131 - +4.6
5,263,131 - +5.1
5,263,171 - +4.5
5,263,171 - +4.9
5,263,175 - +3.6
5,263,175 - +4.9
5,263,175 - +3.4
5,263,175 - +5.3
5,263,175 - +3.6
5,263,175 - +3.5
5,263,175 - +3.8
5,263,175 - +2.2
5,263,175 - +4.6
5,263,175 - +3.3
5,263,234 - +5.6
5,263,257 - +4.0
5,263,267 - +6.2
5,263,331 - +3.2
5,263,333 - +2.5
5,263,377 - +4.2
5,263,377 - +3.4
5,263,403 - +4.5
5,263,496 - +4.4
5,263,644 - +0.4
5,263,652 - +1.2
5,263,652 - +1.4
5,263,722 - +1.4
5,263,722 - +0.8
5,263,769 - ABID97_RS25400 0.13 +0.9
5,263,769 - ABID97_RS25400 0.13 +2.0
5,263,769 - ABID97_RS25400 0.13 +2.6
5,263,769 - ABID97_RS25400 0.13 +0.7
5,263,799 - ABID97_RS25400 0.52 +0.9
5,263,799 - ABID97_RS25400 0.52 +2.4
5,263,815 - ABID97_RS25400 0.73 +0.9
5,263,828 - +0.8
5,263,828 - +1.5
5,263,879 - +0.0
5,263,898 - -1.1
5,264,017 - -1.0
5,264,017 - -0.6
5,264,017 - -0.6
5,264,021 - -1.7
5,264,064 - +1.4
5,264,064 - +0.7
5,264,064 - +0.8
5,264,081 - ABID97_RS25405 0.11 -0.4
5,264,081 - ABID97_RS25405 0.11 -1.6
5,264,081 - ABID97_RS25405 0.11 +0.6
5,264,081 - ABID97_RS25405 0.11 -1.5
5,264,081 - ABID97_RS25405 0.11 +0.3
5,264,109 - ABID97_RS25405 0.13 +0.6
5,264,112 - ABID97_RS25405 0.13 +0.1
5,264,159 - ABID97_RS25405 0.16 -0.4
5,264,171 - ABID97_RS25405 0.17 -1.1
5,264,179 - ABID97_RS25405 0.17 -1.0
5,264,179 - ABID97_RS25405 0.17 +1.5
5,264,179 - ABID97_RS25405 0.17 -0.6
5,264,179 - ABID97_RS25405 0.17 +0.2
5,264,179 - ABID97_RS25405 0.17 -0.0
5,264,179 - ABID97_RS25405 0.17 -0.8
5,264,179 - ABID97_RS25405 0.17 +1.2
5,264,179 - ABID97_RS25405 0.17 -0.0
5,264,222 - ABID97_RS25405 0.20 -1.0
5,264,222 - ABID97_RS25405 0.20 -0.8
5,264,222 - ABID97_RS25405 0.20 -2.9
5,264,222 - ABID97_RS25405 0.20 -0.0
5,264,222 - ABID97_RS25405 0.20 -0.5
5,264,243 - ABID97_RS25405 0.21 -1.2
5,264,243 - ABID97_RS25405 0.21 -0.4
5,264,243 - ABID97_RS25405 0.21 +0.2
5,264,243 - ABID97_RS25405 0.21 -0.0
5,264,243 - ABID97_RS25405 0.21 -0.8
5,264,243 - ABID97_RS25405 0.21 -0.4
5,264,243 - ABID97_RS25405 0.21 +0.2
5,264,307 - ABID97_RS25405 0.26 -0.0
5,264,307 - ABID97_RS25405 0.26 +1.0
5,264,326 - ABID97_RS25405 0.27 +0.2
5,264,326 - ABID97_RS25405 0.27 -1.2
5,264,326 - ABID97_RS25405 0.27 +0.4
5,264,326 - ABID97_RS25405 0.27 +0.6
5,264,326 - ABID97_RS25405 0.27 -0.8
5,264,326 - ABID97_RS25405 0.27 +0.0
5,264,326 - ABID97_RS25405 0.27 -1.0
5,264,333 - ABID97_RS25405 0.27 -0.2
5,264,333 - ABID97_RS25405 0.27 -1.0
5,264,333 - ABID97_RS25405 0.27 +1.0
5,264,364 - ABID97_RS25405 0.29 +1.0
5,264,364 - ABID97_RS25405 0.29 -0.7
5,264,435 - ABID97_RS25405 0.34 -0.8
5,264,458 - ABID97_RS25405 0.35 -0.5
5,264,458 - ABID97_RS25405 0.35 -0.6
5,264,458 - ABID97_RS25405 0.35 -2.5
5,264,458 - ABID97_RS25405 0.35 -0.6
5,264,566 - ABID97_RS25405 0.42 -0.3
5,264,667 - ABID97_RS25405 0.49 -0.2
5,264,667 - ABID97_RS25405 0.49 -1.6
5,264,667 - ABID97_RS25405 0.49 -1.6
5,264,667 - ABID97_RS25405 0.49 +0.8
5,264,667 - ABID97_RS25405 0.49 +0.3
5,264,667 - ABID97_RS25405 0.49 -0.6
5,264,667 - ABID97_RS25405 0.49 +0.4
5,264,667 - ABID97_RS25405 0.49 -1.0
5,264,667 - ABID97_RS25405 0.49 +1.0
5,264,708 - ABID97_RS25405 0.52 -0.0
5,264,708 - ABID97_RS25405 0.52 -2.6
5,264,708 - ABID97_RS25405 0.52 +0.2
5,264,751 - ABID97_RS25405 0.54 +2.0
5,264,751 - ABID97_RS25405 0.54 +0.4
5,264,751 - ABID97_RS25405 0.54 -0.4
5,264,755 - ABID97_RS25405 0.55 +2.0
5,264,755 - ABID97_RS25405 0.55 +2.3
5,264,770 - ABID97_RS25405 0.56 -2.0

Or see this region's nucleotide sequence