Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25370

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25360 and ABID97_RS25365 are separated by 29 nucleotidesABID97_RS25365 and ABID97_RS25370 are separated by 17 nucleotidesABID97_RS25370 and ABID97_RS25375 are separated by 105 nucleotides ABID97_RS25360: ABID97_RS25360 - 4-hydroxyphenylpyruvate dioxygenase, at 5,254,505 to 5,255,632 _RS25360 ABID97_RS25365: ABID97_RS25365 - transporter substrate-binding domain-containing protein, at 5,255,662 to 5,256,459 _RS25365 ABID97_RS25370: ABID97_RS25370 - phenylalanine 4-monooxygenase, at 5,256,477 to 5,257,361 _RS25370 ABID97_RS25375: ABID97_RS25375 - AMP-binding protein, at 5,257,467 to 5,259,158 _RS25375 Position (kb) 5256 5257 5258Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 5255.631 kb on - strandat 5255.631 kb on - strandat 5255.631 kb on - strandat 5255.815 kb on + strand, within ABID97_RS25365at 5255.815 kb on + strand, within ABID97_RS25365at 5255.815 kb on + strand, within ABID97_RS25365at 5255.815 kb on + strand, within ABID97_RS25365at 5255.816 kb on - strand, within ABID97_RS25365at 5255.816 kb on - strand, within ABID97_RS25365at 5256.034 kb on + strand, within ABID97_RS25365at 5256.034 kb on + strand, within ABID97_RS25365at 5256.035 kb on - strand, within ABID97_RS25365at 5256.035 kb on - strand, within ABID97_RS25365at 5256.035 kb on - strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.085 kb on + strand, within ABID97_RS25365at 5256.086 kb on - strand, within ABID97_RS25365at 5256.086 kb on - strand, within ABID97_RS25365at 5256.086 kb on - strand, within ABID97_RS25365at 5256.334 kb on + strand, within ABID97_RS25365at 5256.335 kb on - strand, within ABID97_RS25365at 5256.335 kb on - strand, within ABID97_RS25365at 5256.385 kb on + strandat 5256.385 kb on + strandat 5256.385 kb on + strandat 5256.385 kb on + strandat 5256.385 kb on + strandat 5256.457 kb on + strandat 5256.457 kb on + strandat 5256.457 kb on + strandat 5256.458 kb on - strandat 5256.458 kb on - strandat 5256.458 kb on - strandat 5256.525 kb on + strandat 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.589 kb on - strand, within ABID97_RS25370at 5256.615 kb on + strand, within ABID97_RS25370at 5256.616 kb on - strand, within ABID97_RS25370at 5256.616 kb on - strand, within ABID97_RS25370at 5256.639 kb on + strand, within ABID97_RS25370at 5256.639 kb on + strand, within ABID97_RS25370at 5256.639 kb on + strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.651 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.969 kb on + strand, within ABID97_RS25370at 5256.969 kb on + strand, within ABID97_RS25370at 5256.969 kb on + strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5257.041 kb on + strand, within ABID97_RS25370at 5257.041 kb on + strand, within ABID97_RS25370at 5257.048 kb on - strand, within ABID97_RS25370at 5257.048 kb on - strand, within ABID97_RS25370at 5257.048 kb on - strand, within ABID97_RS25370at 5257.048 kb on - strand, within ABID97_RS25370at 5257.095 kb on + strand, within ABID97_RS25370at 5257.201 kb on - strand, within ABID97_RS25370at 5257.201 kb on - strand, within ABID97_RS25370at 5257.201 kb on - strand, within ABID97_RS25370at 5257.201 kb on - strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.228 kb on - strand, within ABID97_RS25370at 5257.228 kb on - strand, within ABID97_RS25370at 5257.228 kb on - strand, within ABID97_RS25370at 5257.228 kb on - strand, within ABID97_RS25370at 5257.291 kb on - strandat 5257.404 kb on + strandat 5257.404 kb on + strandat 5257.572 kb on + strandat 5257.618 kb on - strandat 5257.758 kb on + strand, within ABID97_RS25375at 5257.758 kb on + strand, within ABID97_RS25375at 5257.759 kb on - strand, within ABID97_RS25375at 5257.759 kb on - strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.785 kb on + strand, within ABID97_RS25375at 5257.785 kb on + strand, within ABID97_RS25375at 5257.785 kb on + strand, within ABID97_RS25375at 5257.786 kb on - strand, within ABID97_RS25375at 5257.786 kb on - strand, within ABID97_RS25375at 5258.116 kb on - strand, within ABID97_RS25375at 5258.116 kb on - strand, within ABID97_RS25375at 5258.116 kb on - strand, within ABID97_RS25375at 5258.116 kb on - strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.269 kb on - strand, within ABID97_RS25375

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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5,255,631 - -0.5
5,255,631 - -3.4
5,255,631 - -1.4
5,255,815 + ABID97_RS25365 0.19 -0.8
5,255,815 + ABID97_RS25365 0.19 -1.5
5,255,815 + ABID97_RS25365 0.19 -2.4
5,255,815 + ABID97_RS25365 0.19 -0.8
5,255,816 - ABID97_RS25365 0.19 -0.8
5,255,816 - ABID97_RS25365 0.19 -1.6
5,256,034 + ABID97_RS25365 0.47 -1.0
5,256,034 + ABID97_RS25365 0.47 -1.2
5,256,035 - ABID97_RS25365 0.47 -5.1
5,256,035 - ABID97_RS25365 0.47 -1.6
5,256,035 - ABID97_RS25365 0.47 -5.3
5,256,085 + ABID97_RS25365 0.53 -0.7
5,256,085 + ABID97_RS25365 0.53 -1.1
5,256,085 + ABID97_RS25365 0.53 -2.2
5,256,085 + ABID97_RS25365 0.53 -0.7
5,256,085 + ABID97_RS25365 0.53 -1.0
5,256,086 - ABID97_RS25365 0.53 -4.2
5,256,086 - ABID97_RS25365 0.53 -5.9
5,256,086 - ABID97_RS25365 0.53 -4.8
5,256,334 + ABID97_RS25365 0.84 -1.1
5,256,335 - ABID97_RS25365 0.84 -5.1
5,256,335 - ABID97_RS25365 0.84 -5.2
5,256,385 + -1.5
5,256,385 + -0.3
5,256,385 + -0.2
5,256,385 + -0.4
5,256,385 + -1.8
5,256,457 + -1.1
5,256,457 + -1.0
5,256,457 + -0.7
5,256,458 - -0.6
5,256,458 - -1.5
5,256,458 - -4.5
5,256,525 + -2.6
5,256,588 + ABID97_RS25370 0.13 -2.4
5,256,588 + ABID97_RS25370 0.13 -6.0
5,256,588 + ABID97_RS25370 0.13 -1.0
5,256,588 + ABID97_RS25370 0.13 -3.9
5,256,588 + ABID97_RS25370 0.13 -3.5
5,256,589 - ABID97_RS25370 0.13 -5.2
5,256,615 + ABID97_RS25370 0.16 -6.1
5,256,616 - ABID97_RS25370 0.16 -3.0
5,256,616 - ABID97_RS25370 0.16 -2.7
5,256,639 + ABID97_RS25370 0.18 -6.2
5,256,639 + ABID97_RS25370 0.18 -5.8
5,256,639 + ABID97_RS25370 0.18 -2.3
5,256,640 - ABID97_RS25370 0.18 -1.5
5,256,640 - ABID97_RS25370 0.18 -5.6
5,256,640 - ABID97_RS25370 0.18 -1.7
5,256,640 - ABID97_RS25370 0.18 -6.2
5,256,640 - ABID97_RS25370 0.18 -6.3
5,256,640 - ABID97_RS25370 0.18 -3.2
5,256,640 - ABID97_RS25370 0.18 -1.2
5,256,640 - ABID97_RS25370 0.18 -3.2
5,256,651 + ABID97_RS25370 0.20 -2.5
5,256,894 + ABID97_RS25370 0.47 -5.6
5,256,894 + ABID97_RS25370 0.47 -0.4
5,256,894 + ABID97_RS25370 0.47 -2.8
5,256,894 + ABID97_RS25370 0.47 -4.8
5,256,894 + ABID97_RS25370 0.47 -5.7
5,256,894 + ABID97_RS25370 0.47 -3.8
5,256,895 - ABID97_RS25370 0.47 -2.9
5,256,895 - ABID97_RS25370 0.47 -6.0
5,256,895 - ABID97_RS25370 0.47 -5.2
5,256,895 - ABID97_RS25370 0.47 -2.4
5,256,895 - ABID97_RS25370 0.47 -1.5
5,256,895 - ABID97_RS25370 0.47 -1.0
5,256,895 - ABID97_RS25370 0.47 -5.8
5,256,895 - ABID97_RS25370 0.47 -4.5
5,256,895 - ABID97_RS25370 0.47 -4.7
5,256,969 + ABID97_RS25370 0.56 -3.6
5,256,969 + ABID97_RS25370 0.56 -2.2
5,256,969 + ABID97_RS25370 0.56 -2.1
5,256,970 - ABID97_RS25370 0.56 -5.1
5,256,970 - ABID97_RS25370 0.56 -4.0
5,256,970 - ABID97_RS25370 0.56 -4.8
5,256,970 - ABID97_RS25370 0.56 -4.2
5,256,970 - ABID97_RS25370 0.56 -4.2
5,256,970 - ABID97_RS25370 0.56 -2.5
5,257,041 + ABID97_RS25370 0.64 -2.1
5,257,041 + ABID97_RS25370 0.64 -3.2
5,257,048 - ABID97_RS25370 0.65 -1.6
5,257,048 - ABID97_RS25370 0.65 -3.2
5,257,048 - ABID97_RS25370 0.65 -4.1
5,257,048 - ABID97_RS25370 0.65 -0.8
5,257,095 + ABID97_RS25370 0.70 -5.2
5,257,201 - ABID97_RS25370 0.82 -5.0
5,257,201 - ABID97_RS25370 0.82 -4.6
5,257,201 - ABID97_RS25370 0.82 -5.0
5,257,201 - ABID97_RS25370 0.82 -3.5
5,257,215 + ABID97_RS25370 0.83 -6.3
5,257,215 + ABID97_RS25370 0.83 -5.1
5,257,215 + ABID97_RS25370 0.83 -6.1
5,257,215 + ABID97_RS25370 0.83 -2.8
5,257,215 + ABID97_RS25370 0.83 -0.8
5,257,216 - ABID97_RS25370 0.84 -3.8
5,257,216 - ABID97_RS25370 0.84 -3.1
5,257,216 - ABID97_RS25370 0.84 -3.7
5,257,216 - ABID97_RS25370 0.84 -4.7
5,257,216 - ABID97_RS25370 0.84 -4.7
5,257,216 - ABID97_RS25370 0.84 -1.5
5,257,227 + ABID97_RS25370 0.85 -2.0
5,257,227 + ABID97_RS25370 0.85 -3.8
5,257,227 + ABID97_RS25370 0.85 -4.9
5,257,227 + ABID97_RS25370 0.85 -3.2
5,257,227 + ABID97_RS25370 0.85 -2.3
5,257,227 + ABID97_RS25370 0.85 -6.1
5,257,228 - ABID97_RS25370 0.85 -4.8
5,257,228 - ABID97_RS25370 0.85 -3.2
5,257,228 - ABID97_RS25370 0.85 -5.6
5,257,228 - ABID97_RS25370 0.85 -5.6
5,257,291 - -5.6
5,257,404 + +0.3
5,257,404 + +0.4
5,257,572 + -0.3
5,257,618 - -0.8
5,257,758 + ABID97_RS25375 0.17 +0.7
5,257,758 + ABID97_RS25375 0.17 +0.4
5,257,759 - ABID97_RS25375 0.17 -0.6
5,257,759 - ABID97_RS25375 0.17 +0.1
5,257,760 + ABID97_RS25375 0.17 +0.3
5,257,760 + ABID97_RS25375 0.17 +0.8
5,257,760 + ABID97_RS25375 0.17 -1.4
5,257,760 + ABID97_RS25375 0.17 -0.5
5,257,760 + ABID97_RS25375 0.17 +0.1
5,257,760 + ABID97_RS25375 0.17 -0.2
5,257,761 - ABID97_RS25375 0.17 -0.3
5,257,761 - ABID97_RS25375 0.17 +0.1
5,257,761 - ABID97_RS25375 0.17 -0.2
5,257,761 - ABID97_RS25375 0.17 -0.0
5,257,761 - ABID97_RS25375 0.17 -0.3
5,257,761 - ABID97_RS25375 0.17 +0.3
5,257,761 - ABID97_RS25375 0.17 +0.2
5,257,761 - ABID97_RS25375 0.17 -0.2
5,257,785 + ABID97_RS25375 0.19 -0.4
5,257,785 + ABID97_RS25375 0.19 -0.8
5,257,785 + ABID97_RS25375 0.19 +0.2
5,257,786 - ABID97_RS25375 0.19 +0.6
5,257,786 - ABID97_RS25375 0.19 -0.4
5,258,116 - ABID97_RS25375 0.38 -0.1
5,258,116 - ABID97_RS25375 0.38 +0.2
5,258,116 - ABID97_RS25375 0.38 -0.0
5,258,116 - ABID97_RS25375 0.38 +0.4
5,258,268 + ABID97_RS25375 0.47 -0.4
5,258,268 + ABID97_RS25375 0.47 +0.2
5,258,268 + ABID97_RS25375 0.47 +0.2
5,258,268 + ABID97_RS25375 0.47 -0.3
5,258,268 + ABID97_RS25375 0.47 +0.3
5,258,269 - ABID97_RS25375 0.47 -0.2

Or see this region's nucleotide sequence