Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24900

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24890 and ABID97_RS24895 overlap by 8 nucleotidesABID97_RS24895 and ABID97_RS24900 are separated by 47 nucleotidesABID97_RS24900 and ABID97_RS24905 overlap by 4 nucleotidesABID97_RS24905 and ABID97_RS24910 overlap by 4 nucleotides ABID97_RS24890: ABID97_RS24890 - phosphatase PAP2/dual specificity phosphatase family protein, at 5,157,169 to 5,158,518 _RS24890 ABID97_RS24895: ABID97_RS24895 - hypothetical protein, at 5,158,511 to 5,158,951 _RS24895 ABID97_RS24900: ABID97_RS24900 - lysophospholipid acyltransferase family protein, at 5,158,999 to 5,159,670 _RS24900 ABID97_RS24905: ABID97_RS24905 - phosphatidate cytidylyltransferase, at 5,159,667 to 5,160,620 _RS24905 ABID97_RS24910: ABID97_RS24910 - YdeI/OmpD-associated family protein, at 5,160,617 to 5,161,228 _RS24910 Position (kb) 5158 5159 5160Strain fitness (log2 ratio) -1 0 1 2 3at 5158.030 kb on + strand, within ABID97_RS24890at 5158.700 kb on + strand, within ABID97_RS24895at 5158.701 kb on - strand, within ABID97_RS24895at 5158.701 kb on - strand, within ABID97_RS24895at 5159.116 kb on + strand, within ABID97_RS24900at 5159.116 kb on + strand, within ABID97_RS24900at 5159.117 kb on - strand, within ABID97_RS24900at 5159.215 kb on + strand, within ABID97_RS24900at 5159.895 kb on + strand, within ABID97_RS24905at 5159.895 kb on + strand, within ABID97_RS24905at 5159.896 kb on - strand, within ABID97_RS24905at 5159.941 kb on - strand, within ABID97_RS24905at 5159.941 kb on - strand, within ABID97_RS24905at 5159.941 kb on - strand, within ABID97_RS24905at 5159.983 kb on - strand, within ABID97_RS24905at 5159.983 kb on - strand, within ABID97_RS24905at 5160.027 kb on + strand, within ABID97_RS24905at 5160.028 kb on - strand, within ABID97_RS24905at 5160.028 kb on - strand, within ABID97_RS24905at 5160.036 kb on + strand, within ABID97_RS24905at 5160.036 kb on + strand, within ABID97_RS24905at 5160.037 kb on - strand, within ABID97_RS24905at 5160.057 kb on + strand, within ABID97_RS24905at 5160.057 kb on + strand, within ABID97_RS24905at 5160.058 kb on - strand, within ABID97_RS24905at 5160.276 kb on + strand, within ABID97_RS24905at 5160.276 kb on + strand, within ABID97_RS24905at 5160.276 kb on + strand, within ABID97_RS24905at 5160.277 kb on - strand, within ABID97_RS24905at 5160.277 kb on - strand, within ABID97_RS24905at 5160.277 kb on - strand, within ABID97_RS24905at 5160.393 kb on + strand, within ABID97_RS24905at 5160.394 kb on - strand, within ABID97_RS24905at 5160.394 kb on - strand, within ABID97_RS24905at 5160.394 kb on - strand, within ABID97_RS24905at 5160.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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5,158,030 + ABID97_RS24890 0.64 +0.1
5,158,700 + ABID97_RS24895 0.43 +0.2
5,158,701 - ABID97_RS24895 0.43 +1.0
5,158,701 - ABID97_RS24895 0.43 +3.6
5,159,116 + ABID97_RS24900 0.17 +0.2
5,159,116 + ABID97_RS24900 0.17 +0.4
5,159,117 - ABID97_RS24900 0.18 +0.0
5,159,215 + ABID97_RS24900 0.32 -0.1
5,159,895 + ABID97_RS24905 0.24 +0.8
5,159,895 + ABID97_RS24905 0.24 -0.2
5,159,896 - ABID97_RS24905 0.24 +1.0
5,159,941 - ABID97_RS24905 0.29 -0.6
5,159,941 - ABID97_RS24905 0.29 -0.1
5,159,941 - ABID97_RS24905 0.29 +0.1
5,159,983 - ABID97_RS24905 0.33 -0.3
5,159,983 - ABID97_RS24905 0.33 -0.0
5,160,027 + ABID97_RS24905 0.38 +0.9
5,160,028 - ABID97_RS24905 0.38 +0.1
5,160,028 - ABID97_RS24905 0.38 +0.2
5,160,036 + ABID97_RS24905 0.39 -0.2
5,160,036 + ABID97_RS24905 0.39 +0.1
5,160,037 - ABID97_RS24905 0.39 -0.1
5,160,057 + ABID97_RS24905 0.41 +0.3
5,160,057 + ABID97_RS24905 0.41 +0.4
5,160,058 - ABID97_RS24905 0.41 +0.3
5,160,276 + ABID97_RS24905 0.64 -1.3
5,160,276 + ABID97_RS24905 0.64 +0.4
5,160,276 + ABID97_RS24905 0.64 -0.2
5,160,277 - ABID97_RS24905 0.64 -0.1
5,160,277 - ABID97_RS24905 0.64 +1.0
5,160,277 - ABID97_RS24905 0.64 -1.2
5,160,393 + ABID97_RS24905 0.76 +0.1
5,160,394 - ABID97_RS24905 0.76 -0.4
5,160,394 - ABID97_RS24905 0.76 +0.2
5,160,394 - ABID97_RS24905 0.76 +2.3
5,160,586 - +0.0

Or see this region's nucleotide sequence