Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24650

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS24645 and ABID97_RS24650 are separated by 575 nucleotidesABID97_RS24650 and ABID97_RS24655 are separated by 23 nucleotides ABID97_RS24645: ABID97_RS24645 - autotransporter outer membrane beta-barrel domain-containing protein, at 5,101,113 to 5,106,347 _RS24645 ABID97_RS24650: ABID97_RS24650 - lysophospholipid acyltransferase family protein, at 5,106,923 to 5,107,669 _RS24650 ABID97_RS24655: ABID97_RS24655 - dihydroorotase, at 5,107,693 to 5,108,979 _RS24655 Position (kb) 5106 5107 5108Strain fitness (log2 ratio) -2 -1 0 1at 5105.935 kb on + strandat 5105.935 kb on + strandat 5105.935 kb on + strandat 5105.935 kb on + strandat 5105.936 kb on - strandat 5105.936 kb on - strandat 5105.936 kb on - strandat 5105.936 kb on - strandat 5106.103 kb on + strandat 5106.103 kb on + strandat 5106.104 kb on - strandat 5106.104 kb on - strandat 5106.104 kb on - strandat 5106.104 kb on - strandat 5106.110 kb on + strandat 5106.111 kb on - strandat 5106.322 kb on + strandat 5106.322 kb on + strandat 5106.334 kb on + strandat 5106.335 kb on - strandat 5106.488 kb on + strandat 5106.619 kb on + strandat 5106.620 kb on - strandat 5106.620 kb on - strandat 5106.632 kb on + strandat 5106.633 kb on - strandat 5106.705 kb on + strandat 5106.705 kb on + strandat 5106.705 kb on + strandat 5106.705 kb on + strandat 5106.706 kb on - strandat 5106.706 kb on - strandat 5106.706 kb on - strandat 5106.706 kb on - strandat 5106.709 kb on + strandat 5106.709 kb on + strandat 5106.709 kb on + strandat 5106.709 kb on + strandat 5106.710 kb on - strandat 5106.710 kb on - strandat 5106.710 kb on - strandat 5106.866 kb on - strandat 5107.093 kb on - strand, within ABID97_RS24650at 5107.093 kb on - strand, within ABID97_RS24650at 5107.329 kb on + strand, within ABID97_RS24650at 5107.329 kb on + strand, within ABID97_RS24650at 5107.330 kb on - strand, within ABID97_RS24650at 5107.330 kb on - strand, within ABID97_RS24650at 5107.330 kb on - strand, within ABID97_RS24650at 5108.453 kb on + strand, within ABID97_RS24655at 5108.453 kb on + strand, within ABID97_RS24655at 5108.454 kb on - strand, within ABID97_RS24655at 5108.471 kb on + strand, within ABID97_RS24655at 5108.471 kb on + strand, within ABID97_RS24655at 5108.471 kb on + strand, within ABID97_RS24655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
5,105,935 + -0.7
5,105,935 + -1.8
5,105,935 + -0.4
5,105,935 + -0.1
5,105,936 - +0.5
5,105,936 - +0.4
5,105,936 - -0.2
5,105,936 - -0.0
5,106,103 + -0.4
5,106,103 + +0.3
5,106,104 - +0.1
5,106,104 - -0.5
5,106,104 - +0.1
5,106,104 - +0.2
5,106,110 + +0.0
5,106,111 - -0.3
5,106,322 + -0.7
5,106,322 + -0.2
5,106,334 + -0.5
5,106,335 - -0.0
5,106,488 + -0.5
5,106,619 + -0.1
5,106,620 - +0.0
5,106,620 - +0.3
5,106,632 + -0.9
5,106,633 - +0.4
5,106,705 + -0.4
5,106,705 + -1.0
5,106,705 + -1.1
5,106,705 + -1.0
5,106,706 - -1.0
5,106,706 - -0.4
5,106,706 - -0.6
5,106,706 - -0.4
5,106,709 + -0.4
5,106,709 + -0.7
5,106,709 + -0.4
5,106,709 + +0.7
5,106,710 - -0.5
5,106,710 - +1.4
5,106,710 - +0.0
5,106,866 - -0.7
5,107,093 - ABID97_RS24650 0.23 -0.6
5,107,093 - ABID97_RS24650 0.23 -1.0
5,107,329 + ABID97_RS24650 0.54 -0.5
5,107,329 + ABID97_RS24650 0.54 -0.7
5,107,330 - ABID97_RS24650 0.54 -0.2
5,107,330 - ABID97_RS24650 0.54 -0.5
5,107,330 - ABID97_RS24650 0.54 -0.7
5,108,453 + ABID97_RS24655 0.59 -0.5
5,108,453 + ABID97_RS24655 0.59 -0.5
5,108,454 - ABID97_RS24655 0.59 -1.9
5,108,471 + ABID97_RS24655 0.60 +0.7
5,108,471 + ABID97_RS24655 0.60 -0.9
5,108,471 + ABID97_RS24655 0.60 -0.3

Or see this region's nucleotide sequence