Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24525 and ABID97_RS24530 are separated by 313 nucleotides ABID97_RS24530 and ABID97_RS24535 are separated by 76 nucleotides ABID97_RS24535 and ABID97_RS24540 are separated by 63 nucleotides ABID97_RS24540 and ABID97_RS24545 are separated by 47 nucleotides
ABID97_RS24525: ABID97_RS24525 - tripartite tricarboxylate transporter substrate-binding protein, at 5,077,217 to 5,078,242
_RS24525
ABID97_RS24530: ABID97_RS24530 - hypothetical protein, at 5,078,556 to 5,078,795
_RS24530
ABID97_RS24535: ABID97_RS24535 - tRNA-Arg, at 5,078,872 to 5,078,946
_RS24535
ABID97_RS24540: ABID97_RS24540 - nitrilase, at 5,079,010 to 5,080,023
_RS24540
ABID97_RS24545: ABID97_RS24545 - branched-chain amino acid ABC transporter permease, at 5,080,071 to 5,081,072
_RS24545
Position (kb) 5079
5080
5081 Strain fitness (log2 ratio) -2
-1
0
1 at 5078.049 kb on + strand, within ABID97_RS24525 at 5078.049 kb on + strand, within ABID97_RS24525 at 5078.050 kb on - strand, within ABID97_RS24525 at 5078.256 kb on + strand at 5078.256 kb on + strand at 5078.256 kb on + strand at 5078.257 kb on - strand at 5078.257 kb on - strand at 5078.257 kb on - strand at 5078.257 kb on - strand at 5078.260 kb on + strand at 5078.260 kb on + strand at 5078.261 kb on - strand at 5078.561 kb on + strand at 5078.562 kb on - strand at 5078.852 kb on + strand at 5078.852 kb on + strand at 5079.106 kb on + strand at 5079.106 kb on + strand at 5079.107 kb on - strand at 5079.107 kb on - strand at 5079.144 kb on - strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.216 kb on + strand, within ABID97_RS24540 at 5079.217 kb on - strand, within ABID97_RS24540 at 5079.217 kb on - strand, within ABID97_RS24540 at 5079.217 kb on - strand, within ABID97_RS24540 at 5079.217 kb on - strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.371 kb on + strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.372 kb on - strand, within ABID97_RS24540 at 5079.393 kb on - strand, within ABID97_RS24540 at 5079.393 kb on - strand, within ABID97_RS24540 at 5079.450 kb on - strand, within ABID97_RS24540 at 5079.509 kb on + strand, within ABID97_RS24540 at 5079.695 kb on + strand, within ABID97_RS24540 at 5080.055 kb on + strand at 5080.055 kb on + strand at 5080.199 kb on - strand, within ABID97_RS24545 at 5080.210 kb on + strand, within ABID97_RS24545 at 5080.211 kb on - strand, within ABID97_RS24545 at 5080.240 kb on + strand, within ABID97_RS24545 at 5080.367 kb on - strand, within ABID97_RS24545 at 5080.367 kb on - strand, within ABID97_RS24545 at 5080.828 kb on + strand, within ABID97_RS24545 at 5080.828 kb on + strand, within ABID97_RS24545 at 5080.829 kb on - strand, within ABID97_RS24545 at 5080.895 kb on + strand, within ABID97_RS24545
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 5,078,049 + ABID97_RS24525 0.81 -1.8 5,078,049 + ABID97_RS24525 0.81 -0.0 5,078,050 - ABID97_RS24525 0.81 -0.7 5,078,256 + -0.2 5,078,256 + +0.0 5,078,256 + -0.2 5,078,257 - +0.6 5,078,257 - -0.1 5,078,257 - +0.4 5,078,257 - -0.7 5,078,260 + -0.0 5,078,260 + -0.3 5,078,261 - -0.4 5,078,561 + -0.5 5,078,562 - -2.0 5,078,852 + -0.0 5,078,852 + +0.4 5,079,106 + +0.1 5,079,106 + -0.5 5,079,107 - +0.1 5,079,107 - -0.6 5,079,144 - ABID97_RS24540 0.13 -0.5 5,079,216 + ABID97_RS24540 0.20 -0.6 5,079,216 + ABID97_RS24540 0.20 +0.2 5,079,216 + ABID97_RS24540 0.20 -0.5 5,079,216 + ABID97_RS24540 0.20 +1.0 5,079,216 + ABID97_RS24540 0.20 -0.8 5,079,216 + ABID97_RS24540 0.20 +0.4 5,079,216 + ABID97_RS24540 0.20 -0.4 5,079,216 + ABID97_RS24540 0.20 -0.5 5,079,217 - ABID97_RS24540 0.20 -0.2 5,079,217 - ABID97_RS24540 0.20 +0.4 5,079,217 - ABID97_RS24540 0.20 -1.2 5,079,217 - ABID97_RS24540 0.20 -1.1 5,079,371 + ABID97_RS24540 0.36 -0.2 5,079,371 + ABID97_RS24540 0.36 -0.9 5,079,371 + ABID97_RS24540 0.36 -0.0 5,079,371 + ABID97_RS24540 0.36 +0.1 5,079,371 + ABID97_RS24540 0.36 +0.2 5,079,372 - ABID97_RS24540 0.36 -0.3 5,079,372 - ABID97_RS24540 0.36 -0.4 5,079,372 - ABID97_RS24540 0.36 +1.4 5,079,372 - ABID97_RS24540 0.36 -0.9 5,079,372 - ABID97_RS24540 0.36 -0.9 5,079,372 - ABID97_RS24540 0.36 -0.1 5,079,393 - ABID97_RS24540 0.38 +0.7 5,079,393 - ABID97_RS24540 0.38 -0.9 5,079,450 - ABID97_RS24540 0.43 -0.4 5,079,509 + ABID97_RS24540 0.49 -0.3 5,079,695 + ABID97_RS24540 0.68 +1.4 5,080,055 + -0.8 5,080,055 + +0.1 5,080,199 - ABID97_RS24545 0.13 +0.2 5,080,210 + ABID97_RS24545 0.14 -0.6 5,080,211 - ABID97_RS24545 0.14 -0.7 5,080,240 + ABID97_RS24545 0.17 -0.6 5,080,367 - ABID97_RS24545 0.30 +0.7 5,080,367 - ABID97_RS24545 0.30 +0.8 5,080,828 + ABID97_RS24545 0.76 -0.3 5,080,828 + ABID97_RS24545 0.76 -0.1 5,080,829 - ABID97_RS24545 0.76 -0.8 5,080,895 + ABID97_RS24545 0.82 -1.7
Or see this region's nucleotide sequence