Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22530 and ABID97_RS22535 are separated by 86 nucleotides ABID97_RS22535 and ABID97_RS22540 are separated by 126 nucleotides
ABID97_RS22530: ABID97_RS22530 - aldo/keto reductase, at 4,664,773 to 4,665,784
_RS22530
ABID97_RS22535: ABID97_RS22535 - alkaline phosphatase D family protein, at 4,665,871 to 4,667,427
_RS22535
ABID97_RS22540: ABID97_RS22540 - MFS transporter, at 4,667,554 to 4,668,810
_RS22540
Position (kb) 4665
4666
4667
4668 Strain fitness (log2 ratio) -1
0
1
2 at 4665.101 kb on + strand, within ABID97_RS22530 at 4665.234 kb on - strand, within ABID97_RS22530 at 4665.834 kb on + strand at 4666.016 kb on + strand at 4666.068 kb on + strand, within ABID97_RS22535 at 4666.068 kb on + strand, within ABID97_RS22535 at 4666.069 kb on - strand, within ABID97_RS22535 at 4666.559 kb on + strand, within ABID97_RS22535 at 4666.616 kb on + strand, within ABID97_RS22535 at 4666.616 kb on + strand, within ABID97_RS22535 at 4666.779 kb on - strand, within ABID97_RS22535 at 4666.779 kb on - strand, within ABID97_RS22535 at 4666.868 kb on + strand, within ABID97_RS22535 at 4666.869 kb on - strand, within ABID97_RS22535 at 4666.874 kb on + strand, within ABID97_RS22535 at 4666.875 kb on - strand, within ABID97_RS22535 at 4666.937 kb on + strand, within ABID97_RS22535 at 4667.069 kb on + strand, within ABID97_RS22535 at 4667.555 kb on + strand at 4667.918 kb on + strand, within ABID97_RS22540 at 4668.074 kb on + strand, within ABID97_RS22540 at 4668.074 kb on + strand, within ABID97_RS22540 at 4668.414 kb on - strand, within ABID97_RS22540
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 4,665,101 + ABID97_RS22530 0.32 -0.0 4,665,234 - ABID97_RS22530 0.46 +0.1 4,665,834 + +0.9 4,666,016 + -0.1 4,666,068 + ABID97_RS22535 0.13 -0.0 4,666,068 + ABID97_RS22535 0.13 +0.2 4,666,069 - ABID97_RS22535 0.13 +0.1 4,666,559 + ABID97_RS22535 0.44 -0.2 4,666,616 + ABID97_RS22535 0.48 -0.2 4,666,616 + ABID97_RS22535 0.48 -0.9 4,666,779 - ABID97_RS22535 0.58 +0.3 4,666,779 - ABID97_RS22535 0.58 -0.2 4,666,868 + ABID97_RS22535 0.64 -0.6 4,666,869 - ABID97_RS22535 0.64 -1.0 4,666,874 + ABID97_RS22535 0.64 -0.1 4,666,875 - ABID97_RS22535 0.64 +1.4 4,666,937 + ABID97_RS22535 0.68 -0.2 4,667,069 + ABID97_RS22535 0.77 +2.0 4,667,555 + -0.3 4,667,918 + ABID97_RS22540 0.29 -0.4 4,668,074 + ABID97_RS22540 0.41 +0.7 4,668,074 + ABID97_RS22540 0.41 -0.0 4,668,414 - ABID97_RS22540 0.68 +0.1
Or see this region's nucleotide sequence