Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20110

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20100 and ABID97_RS20105 overlap by 4 nucleotidesABID97_RS20105 and ABID97_RS20110 are separated by 285 nucleotidesABID97_RS20110 and ABID97_RS20115 are separated by 22 nucleotidesABID97_RS20115 and ABID97_RS20120 overlap by 1 nucleotidesABID97_RS20120 and ABID97_RS20125 are separated by 79 nucleotides ABID97_RS20100: ABID97_RS20100 - DUF2846 domain-containing protein, at 4,156,630 to 4,157,082 _RS20100 ABID97_RS20105: ABID97_RS20105 - hypothetical protein, at 4,157,079 to 4,157,396 _RS20105 ABID97_RS20110: ABID97_RS20110 - MFS transporter, at 4,157,682 to 4,158,905 _RS20110 ABID97_RS20115: ABID97_RS20115 - hypothetical protein, at 4,158,928 to 4,159,068 _RS20115 ABID97_RS20120: ABID97_RS20120 - class I SAM-dependent methyltransferase, at 4,159,068 to 4,159,643 _RS20120 ABID97_RS20125: ABID97_RS20125 - 4-hydroxy-tetrahydrodipicolinate synthase, at 4,159,723 to 4,160,613 _RS20125 Position (kb) 4157 4158 4159Strain fitness (log2 ratio) -1 0 1 2 3at 4156.826 kb on + strand, within ABID97_RS20100at 4156.826 kb on + strand, within ABID97_RS20100at 4156.826 kb on + strand, within ABID97_RS20100at 4156.826 kb on + strand, within ABID97_RS20100at 4156.827 kb on - strand, within ABID97_RS20100at 4156.827 kb on - strand, within ABID97_RS20100at 4156.827 kb on - strand, within ABID97_RS20100at 4156.851 kb on - strand, within ABID97_RS20100at 4156.851 kb on - strand, within ABID97_RS20100at 4156.851 kb on - strand, within ABID97_RS20100at 4156.851 kb on - strand, within ABID97_RS20100at 4156.949 kb on + strand, within ABID97_RS20100at 4156.950 kb on - strand, within ABID97_RS20100at 4156.996 kb on - strand, within ABID97_RS20100at 4157.129 kb on - strand, within ABID97_RS20105at 4157.149 kb on + strand, within ABID97_RS20105at 4157.149 kb on + strand, within ABID97_RS20105at 4157.150 kb on - strand, within ABID97_RS20105at 4157.303 kb on + strand, within ABID97_RS20105at 4157.304 kb on - strand, within ABID97_RS20105at 4157.306 kb on - strand, within ABID97_RS20105at 4157.618 kb on + strandat 4157.719 kb on + strandat 4157.940 kb on + strand, within ABID97_RS20110at 4157.941 kb on - strand, within ABID97_RS20110at 4158.039 kb on + strand, within ABID97_RS20110at 4158.039 kb on + strand, within ABID97_RS20110at 4158.039 kb on + strand, within ABID97_RS20110at 4158.040 kb on - strand, within ABID97_RS20110at 4158.040 kb on - strand, within ABID97_RS20110at 4158.051 kb on + strand, within ABID97_RS20110at 4158.321 kb on + strand, within ABID97_RS20110at 4158.351 kb on + strand, within ABID97_RS20110at 4158.402 kb on + strand, within ABID97_RS20110at 4158.403 kb on - strand, within ABID97_RS20110at 4158.483 kb on + strand, within ABID97_RS20110at 4158.484 kb on - strand, within ABID97_RS20110at 4158.540 kb on + strand, within ABID97_RS20110at 4158.540 kb on + strand, within ABID97_RS20110at 4158.540 kb on + strand, within ABID97_RS20110at 4158.541 kb on - strand, within ABID97_RS20110at 4158.541 kb on - strand, within ABID97_RS20110at 4158.541 kb on - strand, within ABID97_RS20110at 4158.604 kb on - strand, within ABID97_RS20110at 4158.765 kb on + strand, within ABID97_RS20110at 4158.771 kb on + strand, within ABID97_RS20110at 4158.771 kb on + strand, within ABID97_RS20110at 4158.772 kb on - strand, within ABID97_RS20110at 4158.789 kb on + strandat 4158.789 kb on + strandat 4159.012 kb on + strand, within ABID97_RS20115at 4159.013 kb on - strand, within ABID97_RS20115at 4159.013 kb on - strand, within ABID97_RS20115at 4159.013 kb on - strand, within ABID97_RS20115at 4159.356 kb on + strand, within ABID97_RS20120at 4159.356 kb on + strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.530 kb on + strand, within ABID97_RS20120at 4159.531 kb on - strandat 4159.567 kb on + strand, within ABID97_RS20120at 4159.683 kb on + strandat 4159.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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4,156,826 + ABID97_RS20100 0.43 +0.2
4,156,826 + ABID97_RS20100 0.43 -0.7
4,156,826 + ABID97_RS20100 0.43 -0.0
4,156,826 + ABID97_RS20100 0.43 -0.1
4,156,827 - ABID97_RS20100 0.43 +0.6
4,156,827 - ABID97_RS20100 0.43 +0.9
4,156,827 - ABID97_RS20100 0.43 -0.3
4,156,851 - ABID97_RS20100 0.49 +0.3
4,156,851 - ABID97_RS20100 0.49 +0.1
4,156,851 - ABID97_RS20100 0.49 -0.3
4,156,851 - ABID97_RS20100 0.49 -0.2
4,156,949 + ABID97_RS20100 0.70 -0.3
4,156,950 - ABID97_RS20100 0.71 +1.9
4,156,996 - ABID97_RS20100 0.81 +0.1
4,157,129 - ABID97_RS20105 0.16 -1.1
4,157,149 + ABID97_RS20105 0.22 +0.1
4,157,149 + ABID97_RS20105 0.22 +0.4
4,157,150 - ABID97_RS20105 0.22 +0.7
4,157,303 + ABID97_RS20105 0.70 -0.1
4,157,304 - ABID97_RS20105 0.71 +0.4
4,157,306 - ABID97_RS20105 0.71 -0.2
4,157,618 + +0.2
4,157,719 + -1.0
4,157,940 + ABID97_RS20110 0.21 -1.6
4,157,941 - ABID97_RS20110 0.21 +0.4
4,158,039 + ABID97_RS20110 0.29 +0.5
4,158,039 + ABID97_RS20110 0.29 -0.2
4,158,039 + ABID97_RS20110 0.29 +0.4
4,158,040 - ABID97_RS20110 0.29 +0.5
4,158,040 - ABID97_RS20110 0.29 +0.5
4,158,051 + ABID97_RS20110 0.30 +0.4
4,158,321 + ABID97_RS20110 0.52 +0.0
4,158,351 + ABID97_RS20110 0.55 +0.6
4,158,402 + ABID97_RS20110 0.59 +0.1
4,158,403 - ABID97_RS20110 0.59 +0.6
4,158,483 + ABID97_RS20110 0.65 +0.1
4,158,484 - ABID97_RS20110 0.66 -1.3
4,158,540 + ABID97_RS20110 0.70 -0.1
4,158,540 + ABID97_RS20110 0.70 +2.9
4,158,540 + ABID97_RS20110 0.70 -0.1
4,158,541 - ABID97_RS20110 0.70 -0.2
4,158,541 - ABID97_RS20110 0.70 +0.9
4,158,541 - ABID97_RS20110 0.70 +0.3
4,158,604 - ABID97_RS20110 0.75 -0.1
4,158,765 + ABID97_RS20110 0.88 +0.5
4,158,771 + ABID97_RS20110 0.89 +0.1
4,158,771 + ABID97_RS20110 0.89 -0.4
4,158,772 - ABID97_RS20110 0.89 +0.2
4,158,789 + -0.8
4,158,789 + -0.6
4,159,012 + ABID97_RS20115 0.60 +0.0
4,159,013 - ABID97_RS20115 0.60 -0.8
4,159,013 - ABID97_RS20115 0.60 +0.3
4,159,013 - ABID97_RS20115 0.60 -0.4
4,159,356 + ABID97_RS20120 0.50 -0.1
4,159,356 + ABID97_RS20120 0.50 +1.0
4,159,357 - ABID97_RS20120 0.50 -0.1
4,159,357 - ABID97_RS20120 0.50 +0.1
4,159,357 - ABID97_RS20120 0.50 +0.1
4,159,357 - ABID97_RS20120 0.50 -0.9
4,159,357 - ABID97_RS20120 0.50 -0.5
4,159,530 + ABID97_RS20120 0.80 -0.1
4,159,531 - +1.9
4,159,567 + ABID97_RS20120 0.87 -0.6
4,159,683 + -0.5
4,159,684 - -0.5

Or see this region's nucleotide sequence