Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17810

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17795 and ABID97_RS17800 overlap by 4 nucleotidesABID97_RS17800 and ABID97_RS17805 overlap by 1 nucleotidesABID97_RS17805 and ABID97_RS17810 are separated by 192 nucleotidesABID97_RS17810 and ABID97_RS17815 are separated by 78 nucleotidesABID97_RS17815 and ABID97_RS17820 overlap by 33 nucleotidesABID97_RS17820 and ABID97_RS17825 are separated by 26 nucleotides ABID97_RS17795: ABID97_RS17795 - hypothetical protein, at 3,678,117 to 3,678,389 _RS17795 ABID97_RS17800: ABID97_RS17800 - hypothetical protein, at 3,678,386 to 3,678,550 _RS17800 ABID97_RS17805: ABID97_RS17805 - hypothetical protein, at 3,678,550 to 3,678,876 _RS17805 ABID97_RS17810: ABID97_RS17810 - hypothetical protein, at 3,679,069 to 3,679,818 _RS17810 ABID97_RS17815: ABID97_RS17815 - hypothetical protein, at 3,679,897 to 3,680,268 _RS17815 ABID97_RS17820: ABID97_RS17820 - tRNA-Ser, at 3,680,236 to 3,680,328 _RS17820 ABID97_RS17825: ABID97_RS17825 - aspartate kinase, at 3,680,355 to 3,681,623 _RS17825 Position (kb) 3679 3680Strain fitness (log2 ratio) -2 -1 0 1 2at 3678.678 kb on - strand, within ABID97_RS17805at 3678.797 kb on + strand, within ABID97_RS17805at 3678.801 kb on + strand, within ABID97_RS17805at 3678.801 kb on + strand, within ABID97_RS17805at 3678.801 kb on + strand, within ABID97_RS17805at 3678.802 kb on - strand, within ABID97_RS17805at 3678.802 kb on - strand, within ABID97_RS17805at 3678.888 kb on - strandat 3678.960 kb on + strandat 3678.960 kb on + strandat 3678.960 kb on + strandat 3678.976 kb on - strandat 3679.095 kb on + strandat 3679.363 kb on + strand, within ABID97_RS17810at 3679.372 kb on - strand, within ABID97_RS17810at 3679.372 kb on - strand, within ABID97_RS17810at 3679.509 kb on + strand, within ABID97_RS17810at 3679.509 kb on + strand, within ABID97_RS17810at 3679.510 kb on - strand, within ABID97_RS17810at 3679.569 kb on + strand, within ABID97_RS17810at 3679.570 kb on - strand, within ABID97_RS17810at 3679.593 kb on + strand, within ABID97_RS17810at 3679.836 kb on - strandat 3679.967 kb on + strand, within ABID97_RS17815

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,678,678 - ABID97_RS17805 0.39 -1.1
3,678,797 + ABID97_RS17805 0.76 +0.2
3,678,801 + ABID97_RS17805 0.77 -0.1
3,678,801 + ABID97_RS17805 0.77 -0.1
3,678,801 + ABID97_RS17805 0.77 +2.2
3,678,802 - ABID97_RS17805 0.77 +0.4
3,678,802 - ABID97_RS17805 0.77 +2.4
3,678,888 - +0.0
3,678,960 + -0.2
3,678,960 + -0.1
3,678,960 + -0.4
3,678,976 - +0.3
3,679,095 + -1.0
3,679,363 + ABID97_RS17810 0.39 +0.6
3,679,372 - ABID97_RS17810 0.40 -0.0
3,679,372 - ABID97_RS17810 0.40 +0.3
3,679,509 + ABID97_RS17810 0.59 -0.1
3,679,509 + ABID97_RS17810 0.59 +0.1
3,679,510 - ABID97_RS17810 0.59 +0.5
3,679,569 + ABID97_RS17810 0.67 -0.3
3,679,570 - ABID97_RS17810 0.67 -0.2
3,679,593 + ABID97_RS17810 0.70 +0.6
3,679,836 - +0.1
3,679,967 + ABID97_RS17815 0.19 -1.8

Or see this region's nucleotide sequence