Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14255

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14245 and ABID97_RS14250 are separated by 163 nucleotidesABID97_RS14250 and ABID97_RS14255 are separated by 53 nucleotidesABID97_RS14255 and ABID97_RS14260 are separated by 74 nucleotides ABID97_RS14245: ABID97_RS14245 - ribosome biogenesis GTPase Der, at 2,963,410 to 2,964,753 _RS14245 ABID97_RS14250: ABID97_RS14250 - RNA chaperone Hfq, at 2,964,917 to 2,965,162 _RS14250 ABID97_RS14255: ABID97_RS14255 - GTPase HflX, at 2,965,216 to 2,966,385 _RS14255 ABID97_RS14260: ABID97_RS14260 - FtsH protease activity modulator HflK, at 2,966,460 to 2,967,833 _RS14260 Position (kb) 2965 2966 2967Strain fitness (log2 ratio) -2 -1 0 1at 2964.785 kb on + strandat 2964.785 kb on + strandat 2964.786 kb on - strandat 2964.786 kb on - strandat 2965.520 kb on - strand, within ABID97_RS14255at 2965.609 kb on + strand, within ABID97_RS14255at 2965.609 kb on + strand, within ABID97_RS14255at 2965.609 kb on + strand, within ABID97_RS14255at 2965.609 kb on + strand, within ABID97_RS14255at 2965.835 kb on - strand, within ABID97_RS14255at 2965.835 kb on - strand, within ABID97_RS14255at 2965.939 kb on + strand, within ABID97_RS14255at 2965.940 kb on - strand, within ABID97_RS14255at 2966.234 kb on + strand, within ABID97_RS14255at 2966.256 kb on + strand, within ABID97_RS14255at 2966.257 kb on - strand, within ABID97_RS14255at 2966.889 kb on + strand, within ABID97_RS14260at 2966.889 kb on + strand, within ABID97_RS14260at 2966.890 kb on - strand, within ABID97_RS14260at 2966.890 kb on - strand, within ABID97_RS14260

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,964,785 + +0.5
2,964,785 + -0.8
2,964,786 - -1.2
2,964,786 - +0.2
2,965,520 - ABID97_RS14255 0.26 -0.6
2,965,609 + ABID97_RS14255 0.34 -2.3
2,965,609 + ABID97_RS14255 0.34 -0.5
2,965,609 + ABID97_RS14255 0.34 -0.3
2,965,609 + ABID97_RS14255 0.34 -2.7
2,965,835 - ABID97_RS14255 0.53 -2.3
2,965,835 - ABID97_RS14255 0.53 -1.3
2,965,939 + ABID97_RS14255 0.62 -0.6
2,965,940 - ABID97_RS14255 0.62 -1.5
2,966,234 + ABID97_RS14255 0.87 -0.8
2,966,256 + ABID97_RS14255 0.89 -1.1
2,966,257 - ABID97_RS14255 0.89 -1.1
2,966,889 + ABID97_RS14260 0.31 -1.0
2,966,889 + ABID97_RS14260 0.31 -1.0
2,966,890 - ABID97_RS14260 0.31 -0.4
2,966,890 - ABID97_RS14260 0.31 -0.7

Or see this region's nucleotide sequence