Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14085

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14080 and ABID97_RS14085 are separated by 5 nucleotidesABID97_RS14085 and ABID97_RS14090 are separated by 76 nucleotidesABID97_RS14090 and ABID97_RS14095 overlap by 4 nucleotides ABID97_RS14080: ABID97_RS14080 - M3 family metallopeptidase, at 2,920,960 to 2,923,008 _RS14080 ABID97_RS14085: ABID97_RS14085 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 2,923,014 to 2,923,865 _RS14085 ABID97_RS14090: ABID97_RS14090 - response regulator transcription factor, at 2,923,942 to 2,924,571 _RS14090 ABID97_RS14095: ABID97_RS14095 - PAS domain S-box protein, at 2,924,568 to 2,927,111 _RS14095 Position (kb) 2923 2924Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2922.023 kb on + strand, within ABID97_RS14080at 2922.023 kb on + strand, within ABID97_RS14080at 2922.024 kb on - strand, within ABID97_RS14080at 2922.107 kb on + strand, within ABID97_RS14080at 2922.308 kb on + strand, within ABID97_RS14080at 2922.309 kb on - strand, within ABID97_RS14080at 2922.309 kb on - strand, within ABID97_RS14080at 2922.309 kb on - strand, within ABID97_RS14080at 2922.309 kb on - strand, within ABID97_RS14080at 2922.318 kb on - strand, within ABID97_RS14080at 2922.368 kb on + strand, within ABID97_RS14080at 2922.368 kb on + strand, within ABID97_RS14080at 2922.368 kb on + strand, within ABID97_RS14080at 2922.369 kb on - strand, within ABID97_RS14080at 2922.395 kb on + strand, within ABID97_RS14080at 2922.395 kb on + strand, within ABID97_RS14080at 2922.483 kb on - strand, within ABID97_RS14080at 2922.483 kb on - strand, within ABID97_RS14080at 2922.485 kb on + strand, within ABID97_RS14080at 2922.486 kb on - strand, within ABID97_RS14080at 2922.486 kb on - strand, within ABID97_RS14080at 2922.680 kb on + strand, within ABID97_RS14080at 2922.680 kb on + strand, within ABID97_RS14080at 2922.680 kb on + strand, within ABID97_RS14080at 2922.680 kb on + strand, within ABID97_RS14080at 2922.681 kb on - strand, within ABID97_RS14080at 2922.681 kb on - strand, within ABID97_RS14080at 2922.689 kb on + strand, within ABID97_RS14080at 2922.690 kb on - strand, within ABID97_RS14080at 2922.752 kb on + strand, within ABID97_RS14080at 2922.752 kb on + strand, within ABID97_RS14080at 2922.753 kb on - strand, within ABID97_RS14080at 2923.884 kb on + strandat 2923.884 kb on + strandat 2923.937 kb on - strandat 2923.944 kb on - strandat 2923.944 kb on - strandat 2923.944 kb on - strandat 2924.477 kb on + strand, within ABID97_RS14090at 2924.478 kb on - strand, within ABID97_RS14090at 2924.516 kb on - strandat 2924.540 kb on + strandat 2924.540 kb on + strandat 2924.540 kb on + strandat 2924.540 kb on + strandat 2924.541 kb on - strandat 2924.541 kb on - strandat 2924.541 kb on - strandat 2924.541 kb on - strandat 2924.541 kb on - strandat 2924.541 kb on - strandat 2924.541 kb on - strandat 2924.578 kb on - strandat 2924.578 kb on - strandat 2924.578 kb on - strandat 2924.668 kb on + strandat 2924.668 kb on + strandat 2924.668 kb on + strandat 2924.669 kb on - strandat 2924.669 kb on - strandat 2924.669 kb on - strandat 2924.756 kb on + strandat 2924.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,922,023 + ABID97_RS14080 0.52 +0.3
2,922,023 + ABID97_RS14080 0.52 +0.5
2,922,024 - ABID97_RS14080 0.52 -0.3
2,922,107 + ABID97_RS14080 0.56 +0.4
2,922,308 + ABID97_RS14080 0.66 +1.1
2,922,309 - ABID97_RS14080 0.66 +0.0
2,922,309 - ABID97_RS14080 0.66 +0.5
2,922,309 - ABID97_RS14080 0.66 +0.1
2,922,309 - ABID97_RS14080 0.66 +0.2
2,922,318 - ABID97_RS14080 0.66 -0.6
2,922,368 + ABID97_RS14080 0.69 +0.0
2,922,368 + ABID97_RS14080 0.69 -0.1
2,922,368 + ABID97_RS14080 0.69 -0.1
2,922,369 - ABID97_RS14080 0.69 +0.2
2,922,395 + ABID97_RS14080 0.70 +0.1
2,922,395 + ABID97_RS14080 0.70 +1.7
2,922,483 - ABID97_RS14080 0.74 +0.3
2,922,483 - ABID97_RS14080 0.74 +0.2
2,922,485 + ABID97_RS14080 0.74 +1.0
2,922,486 - ABID97_RS14080 0.74 +0.5
2,922,486 - ABID97_RS14080 0.74 -0.3
2,922,680 + ABID97_RS14080 0.84 +0.0
2,922,680 + ABID97_RS14080 0.84 -0.0
2,922,680 + ABID97_RS14080 0.84 +1.4
2,922,680 + ABID97_RS14080 0.84 +0.4
2,922,681 - ABID97_RS14080 0.84 -0.4
2,922,681 - ABID97_RS14080 0.84 -0.3
2,922,689 + ABID97_RS14080 0.84 +0.9
2,922,690 - ABID97_RS14080 0.84 -0.2
2,922,752 + ABID97_RS14080 0.87 +0.2
2,922,752 + ABID97_RS14080 0.87 -0.0
2,922,753 - ABID97_RS14080 0.88 +1.3
2,923,884 + -0.0
2,923,884 + -0.1
2,923,937 - -0.1
2,923,944 - -2.1
2,923,944 - -0.3
2,923,944 - -0.5
2,924,477 + ABID97_RS14090 0.85 -1.0
2,924,478 - ABID97_RS14090 0.85 -0.1
2,924,516 - -2.8
2,924,540 + -1.0
2,924,540 + -2.6
2,924,540 + -1.3
2,924,540 + -0.8
2,924,541 - -4.2
2,924,541 - -0.3
2,924,541 - -4.0
2,924,541 - -1.8
2,924,541 - -2.6
2,924,541 - -2.4
2,924,541 - -1.7
2,924,578 - -0.0
2,924,578 - -1.1
2,924,578 - +0.2
2,924,668 + -0.8
2,924,668 + -0.8
2,924,668 + -2.0
2,924,669 - -1.6
2,924,669 - -1.4
2,924,669 - -2.1
2,924,756 + -0.5
2,924,774 - -1.1

Or see this region's nucleotide sequence