Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12300

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12290 and ABID97_RS12295 are separated by 12 nucleotidesABID97_RS12295 and ABID97_RS12300 overlap by 4 nucleotidesABID97_RS12300 and ABID97_RS12305 are separated by 253 nucleotidesABID97_RS12305 and ABID97_RS12310 are separated by 25 nucleotides ABID97_RS12290: ABID97_RS12290 - c-type cytochrome, at 2,551,470 to 2,552,333 _RS12290 ABID97_RS12295: ABID97_RS12295 - hypothetical protein, at 2,552,346 to 2,552,648 _RS12295 ABID97_RS12300: ABID97_RS12300 - hypothetical protein, at 2,552,645 to 2,553,076 _RS12300 ABID97_RS12305: ABID97_RS12305 - hypothetical protein, at 2,553,330 to 2,553,764 _RS12305 ABID97_RS12310: ABID97_RS12310 - thiamine pyrophosphate-requiring protein, at 2,553,790 to 2,555,571 _RS12310 Position (kb) 2552 2553 2554Strain fitness (log2 ratio) -1 0 1at 2551.960 kb on - strand, within ABID97_RS12290at 2551.960 kb on - strand, within ABID97_RS12290at 2552.091 kb on + strand, within ABID97_RS12290at 2552.177 kb on + strand, within ABID97_RS12290at 2552.177 kb on + strand, within ABID97_RS12290at 2552.350 kb on + strandat 2552.351 kb on - strandat 2552.764 kb on - strand, within ABID97_RS12300at 2552.932 kb on - strand, within ABID97_RS12300at 2552.932 kb on - strand, within ABID97_RS12300at 2553.062 kb on + strandat 2553.062 kb on + strandat 2553.141 kb on + strandat 2553.141 kb on + strandat 2553.141 kb on + strandat 2553.141 kb on + strandat 2553.142 kb on - strandat 2553.142 kb on - strandat 2553.878 kb on + strandat 2553.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,551,960 - ABID97_RS12290 0.57 -0.2
2,551,960 - ABID97_RS12290 0.57 -0.3
2,552,091 + ABID97_RS12290 0.72 -0.2
2,552,177 + ABID97_RS12290 0.82 +0.5
2,552,177 + ABID97_RS12290 0.82 +0.5
2,552,350 + -0.4
2,552,351 - +0.2
2,552,764 - ABID97_RS12300 0.28 +0.0
2,552,932 - ABID97_RS12300 0.66 -0.8
2,552,932 - ABID97_RS12300 0.66 -0.5
2,553,062 + -0.8
2,553,062 + +0.1
2,553,141 + +0.1
2,553,141 + -0.3
2,553,141 + -0.3
2,553,141 + -0.8
2,553,142 - -0.6
2,553,142 - -0.6
2,553,878 + -0.5
2,553,878 + -0.2

Or see this region's nucleotide sequence