Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12290 and ABID97_RS12295 are separated by 12 nucleotides ABID97_RS12295 and ABID97_RS12300 overlap by 4 nucleotides ABID97_RS12300 and ABID97_RS12305 are separated by 253 nucleotides ABID97_RS12305 and ABID97_RS12310 are separated by 25 nucleotides
ABID97_RS12290: ABID97_RS12290 - c-type cytochrome, at 2,551,470 to 2,552,333
_RS12290
ABID97_RS12295: ABID97_RS12295 - hypothetical protein, at 2,552,346 to 2,552,648
_RS12295
ABID97_RS12300: ABID97_RS12300 - hypothetical protein, at 2,552,645 to 2,553,076
_RS12300
ABID97_RS12305: ABID97_RS12305 - hypothetical protein, at 2,553,330 to 2,553,764
_RS12305
ABID97_RS12310: ABID97_RS12310 - thiamine pyrophosphate-requiring protein, at 2,553,790 to 2,555,571
_RS12310
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-1
0
1 at 2551.960 kb on - strand, within ABID97_RS12290 at 2551.960 kb on - strand, within ABID97_RS12290 at 2552.091 kb on + strand, within ABID97_RS12290 at 2552.177 kb on + strand, within ABID97_RS12290 at 2552.177 kb on + strand, within ABID97_RS12290 at 2552.350 kb on + strand at 2552.351 kb on - strand at 2552.764 kb on - strand, within ABID97_RS12300 at 2552.932 kb on - strand, within ABID97_RS12300 at 2552.932 kb on - strand, within ABID97_RS12300 at 2553.062 kb on + strand at 2553.062 kb on + strand at 2553.141 kb on + strand at 2553.141 kb on + strand at 2553.141 kb on + strand at 2553.141 kb on + strand at 2553.142 kb on - strand at 2553.142 kb on - strand at 2553.878 kb on + strand at 2553.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,551,960 - ABID97_RS12290 0.57 -0.2 2,551,960 - ABID97_RS12290 0.57 -0.3 2,552,091 + ABID97_RS12290 0.72 -0.2 2,552,177 + ABID97_RS12290 0.82 +0.5 2,552,177 + ABID97_RS12290 0.82 +0.5 2,552,350 + -0.4 2,552,351 - +0.2 2,552,764 - ABID97_RS12300 0.28 +0.0 2,552,932 - ABID97_RS12300 0.66 -0.8 2,552,932 - ABID97_RS12300 0.66 -0.5 2,553,062 + -0.8 2,553,062 + +0.1 2,553,141 + +0.1 2,553,141 + -0.3 2,553,141 + -0.3 2,553,141 + -0.8 2,553,142 - -0.6 2,553,142 - -0.6 2,553,878 + -0.5 2,553,878 + -0.2
Or see this region's nucleotide sequence