Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11600

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11590 and ABID97_RS11595 overlap by 4 nucleotidesABID97_RS11595 and ABID97_RS11600 are separated by 39 nucleotidesABID97_RS11600 and ABID97_RS11605 are separated by 2 nucleotides ABID97_RS11590: ABID97_RS11590 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 2,394,039 to 2,395,466 _RS11590 ABID97_RS11595: ABID97_RS11595 - NAD(P) transhydrogenase subunit alpha, at 2,395,463 to 2,395,795 _RS11595 ABID97_RS11600: ABID97_RS11600 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 2,395,835 to 2,396,965 _RS11600 ABID97_RS11605: ABID97_RS11605 - AMP-binding protein, at 2,396,968 to 2,398,605 _RS11605 Position (kb) 2395 2396 2397Strain fitness (log2 ratio) -2 -1 0 1at 2396.278 kb on - strand, within ABID97_RS11600at 2397.058 kb on - strandat 2397.060 kb on - strandat 2397.833 kb on - strand, within ABID97_RS11605at 2397.886 kb on + strand, within ABID97_RS11605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,396,278 - ABID97_RS11600 0.39 +1.5
2,397,058 - +0.0
2,397,060 - -2.0
2,397,833 - ABID97_RS11605 0.53 +0.1
2,397,886 + ABID97_RS11605 0.56 +0.2

Or see this region's nucleotide sequence