Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11590

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11580 and ABID97_RS11585 are separated by 82 nucleotidesABID97_RS11585 and ABID97_RS11590 are separated by 49 nucleotidesABID97_RS11590 and ABID97_RS11595 overlap by 4 nucleotidesABID97_RS11595 and ABID97_RS11600 are separated by 39 nucleotides ABID97_RS11580: ABID97_RS11580 - SDR family oxidoreductase, at 2,392,456 to 2,393,157 _RS11580 ABID97_RS11585: ABID97_RS11585 - glucose 1-dehydrogenase, at 2,393,240 to 2,393,989 _RS11585 ABID97_RS11590: ABID97_RS11590 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 2,394,039 to 2,395,466 _RS11590 ABID97_RS11595: ABID97_RS11595 - NAD(P) transhydrogenase subunit alpha, at 2,395,463 to 2,395,795 _RS11595 ABID97_RS11600: ABID97_RS11600 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 2,395,835 to 2,396,965 _RS11600 Position (kb) 2394 2395 2396Strain fitness (log2 ratio) -1 0 1at 2393.057 kb on + strand, within ABID97_RS11580at 2393.217 kb on + strandat 2396.278 kb on - strand, within ABID97_RS11600

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,393,057 + ABID97_RS11580 0.86 +0.5
2,393,217 + -0.1
2,396,278 - ABID97_RS11600 0.39 +1.5

Or see this region's nucleotide sequence