Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10405

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10400 and ABID97_RS10405 are separated by 93 nucleotidesABID97_RS10405 and ABID97_RS10410 are separated by 15 nucleotides ABID97_RS10400: ABID97_RS10400 - ROK family protein, at 2,160,462 to 2,161,514 _RS10400 ABID97_RS10405: ABID97_RS10405 - efflux transporter outer membrane subunit, at 2,161,608 to 2,163,047 _RS10405 ABID97_RS10410: ABID97_RS10410 - ABC transporter permease, at 2,163,063 to 2,164,181 _RS10410 Position (kb) 2161 2162 2163 2164Strain fitness (log2 ratio) -1 0 1at 2161.565 kb on - strandat 2161.565 kb on - strandat 2162.581 kb on + strand, within ABID97_RS10405at 2163.175 kb on + strand, within ABID97_RS10410at 2163.310 kb on + strand, within ABID97_RS10410at 2164.045 kb on + strand, within ABID97_RS10410at 2164.046 kb on - strand, within ABID97_RS10410

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,161,565 - -0.8
2,161,565 - -0.5
2,162,581 + ABID97_RS10405 0.68 -0.4
2,163,175 + ABID97_RS10410 0.10 -0.3
2,163,310 + ABID97_RS10410 0.22 +0.9
2,164,045 + ABID97_RS10410 0.88 +0.2
2,164,046 - ABID97_RS10410 0.88 -0.7

Or see this region's nucleotide sequence