Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08720

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08710 and ABID97_RS08715 overlap by 4 nucleotidesABID97_RS08715 and ABID97_RS08720 are separated by 114 nucleotidesABID97_RS08720 and ABID97_RS08725 are separated by 13 nucleotides ABID97_RS08710: ABID97_RS08710 - polynucleotide adenylyltransferase PcnB, at 1,826,614 to 1,828,254 _RS08710 ABID97_RS08715: ABID97_RS08715 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,828,251 to 1,828,907 _RS08715 ABID97_RS08720: ABID97_RS08720 - DUF47 domain-containing protein, at 1,829,022 to 1,829,666 _RS08720 ABID97_RS08725: ABID97_RS08725 - inorganic phosphate transporter, at 1,829,680 to 1,830,690 _RS08725 Position (kb) 1829 1830Strain fitness (log2 ratio) -1 0 1at 1828.957 kb on - strandat 1829.130 kb on + strand, within ABID97_RS08720at 1829.130 kb on + strand, within ABID97_RS08720at 1829.130 kb on + strand, within ABID97_RS08720at 1829.130 kb on + strand, within ABID97_RS08720at 1829.131 kb on - strand, within ABID97_RS08720at 1829.157 kb on + strand, within ABID97_RS08720at 1829.157 kb on + strand, within ABID97_RS08720at 1829.157 kb on + strand, within ABID97_RS08720at 1829.157 kb on + strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.334 kb on + strand, within ABID97_RS08720at 1829.586 kb on + strand, within ABID97_RS08720at 1829.586 kb on + strand, within ABID97_RS08720at 1829.586 kb on + strand, within ABID97_RS08720at 1829.586 kb on + strand, within ABID97_RS08720at 1829.587 kb on - strand, within ABID97_RS08720at 1829.587 kb on - strand, within ABID97_RS08720at 1829.587 kb on - strand, within ABID97_RS08720at 1829.983 kb on + strand, within ABID97_RS08725at 1829.986 kb on + strand, within ABID97_RS08725at 1830.238 kb on + strand, within ABID97_RS08725at 1830.239 kb on - strand, within ABID97_RS08725at 1830.364 kb on + strand, within ABID97_RS08725at 1830.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,828,957 - -0.7
1,829,130 + ABID97_RS08720 0.17 -0.8
1,829,130 + ABID97_RS08720 0.17 -0.4
1,829,130 + ABID97_RS08720 0.17 -0.5
1,829,130 + ABID97_RS08720 0.17 -0.6
1,829,131 - ABID97_RS08720 0.17 +0.4
1,829,157 + ABID97_RS08720 0.21 -0.6
1,829,157 + ABID97_RS08720 0.21 -0.2
1,829,157 + ABID97_RS08720 0.21 -0.4
1,829,157 + ABID97_RS08720 0.21 -0.5
1,829,158 - ABID97_RS08720 0.21 -0.9
1,829,158 - ABID97_RS08720 0.21 -0.8
1,829,158 - ABID97_RS08720 0.21 -1.4
1,829,158 - ABID97_RS08720 0.21 -0.2
1,829,158 - ABID97_RS08720 0.21 +0.9
1,829,334 + ABID97_RS08720 0.48 -0.9
1,829,586 + ABID97_RS08720 0.87 -1.4
1,829,586 + ABID97_RS08720 0.87 -0.2
1,829,586 + ABID97_RS08720 0.87 -0.7
1,829,586 + ABID97_RS08720 0.87 -1.1
1,829,587 - ABID97_RS08720 0.88 -1.0
1,829,587 - ABID97_RS08720 0.88 -1.6
1,829,587 - ABID97_RS08720 0.88 -1.7
1,829,983 + ABID97_RS08725 0.30 -0.4
1,829,986 + ABID97_RS08725 0.30 +0.2
1,830,238 + ABID97_RS08725 0.55 -1.2
1,830,239 - ABID97_RS08725 0.55 -0.4
1,830,364 + ABID97_RS08725 0.68 +0.2
1,830,665 - +0.0

Or see this region's nucleotide sequence