Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08330

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08320 and ABID97_RS08325 are separated by 31 nucleotidesABID97_RS08325 and ABID97_RS08330 are separated by 9 nucleotidesABID97_RS08330 and ABID97_RS08335 are separated by 17 nucleotidesABID97_RS08335 and ABID97_RS08340 are separated by 21 nucleotides ABID97_RS08320: ABID97_RS08320 - beta-ketoacyl-ACP synthase II, at 1,748,879 to 1,750,123 _RS08320 ABID97_RS08325: ABID97_RS08325 - hypothetical protein, at 1,750,155 to 1,750,619 _RS08325 ABID97_RS08330: ABID97_RS08330 - RNA polymerase sigma factor RpoE, at 1,750,629 to 1,751,303 _RS08330 ABID97_RS08335: ABID97_RS08335 - sigma-E factor negative regulatory protein, at 1,751,321 to 1,751,986 _RS08335 ABID97_RS08340: ABID97_RS08340 - MucB/RseB C-terminal domain-containing protein, at 1,752,008 to 1,753,075 _RS08340 Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1750.245 kb on + strand, within ABID97_RS08325at 1750.245 kb on + strand, within ABID97_RS08325at 1750.246 kb on - strand, within ABID97_RS08325at 1750.246 kb on - strand, within ABID97_RS08325at 1750.246 kb on - strand, within ABID97_RS08325at 1750.246 kb on - strand, within ABID97_RS08325at 1750.246 kb on - strand, within ABID97_RS08325at 1750.246 kb on - strand, within ABID97_RS08325at 1750.546 kb on + strand, within ABID97_RS08325at 1750.547 kb on - strand, within ABID97_RS08325at 1750.548 kb on + strand, within ABID97_RS08325at 1750.548 kb on + strand, within ABID97_RS08325at 1750.548 kb on + strand, within ABID97_RS08325at 1750.549 kb on - strand, within ABID97_RS08325at 1750.776 kb on + strand, within ABID97_RS08330at 1750.776 kb on + strand, within ABID97_RS08330at 1750.905 kb on + strand, within ABID97_RS08330at 1750.905 kb on + strand, within ABID97_RS08330at 1750.905 kb on + strand, within ABID97_RS08330at 1750.905 kb on + strand, within ABID97_RS08330at 1750.905 kb on + strand, within ABID97_RS08330at 1750.905 kb on + strand, within ABID97_RS08330at 1750.906 kb on - strand, within ABID97_RS08330at 1750.906 kb on - strand, within ABID97_RS08330at 1750.934 kb on + strand, within ABID97_RS08330at 1750.935 kb on - strand, within ABID97_RS08330at 1751.026 kb on - strand, within ABID97_RS08330at 1751.026 kb on - strand, within ABID97_RS08330at 1751.175 kb on + strand, within ABID97_RS08330at 1751.175 kb on + strand, within ABID97_RS08330at 1751.175 kb on + strand, within ABID97_RS08330at 1751.175 kb on + strand, within ABID97_RS08330at 1751.176 kb on - strand, within ABID97_RS08330at 1751.176 kb on - strand, within ABID97_RS08330at 1751.176 kb on - strand, within ABID97_RS08330at 1751.176 kb on - strand, within ABID97_RS08330at 1751.176 kb on - strand, within ABID97_RS08330at 1751.301 kb on + strandat 1751.301 kb on + strandat 1751.301 kb on + strandat 1751.301 kb on + strandat 1751.301 kb on + strandat 1751.302 kb on - strandat 1751.302 kb on - strandat 1751.305 kb on + strandat 1751.306 kb on - strandat 1752.208 kb on + strand, within ABID97_RS08340at 1752.209 kb on - strand, within ABID97_RS08340at 1752.209 kb on - strand, within ABID97_RS08340at 1752.212 kb on + strand, within ABID97_RS08340at 1752.212 kb on + strand, within ABID97_RS08340at 1752.212 kb on + strand, within ABID97_RS08340at 1752.212 kb on + strand, within ABID97_RS08340at 1752.212 kb on + strand, within ABID97_RS08340at 1752.213 kb on - strand, within ABID97_RS08340at 1752.213 kb on - strand, within ABID97_RS08340at 1752.213 kb on - strand, within ABID97_RS08340at 1752.213 kb on - strand, within ABID97_RS08340at 1752.213 kb on - strand, within ABID97_RS08340at 1752.213 kb on - strand, within ABID97_RS08340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,750,245 + ABID97_RS08325 0.19 -0.4
1,750,245 + ABID97_RS08325 0.19 -0.0
1,750,246 - ABID97_RS08325 0.20 -0.1
1,750,246 - ABID97_RS08325 0.20 +0.5
1,750,246 - ABID97_RS08325 0.20 -2.5
1,750,246 - ABID97_RS08325 0.20 +0.6
1,750,246 - ABID97_RS08325 0.20 -0.1
1,750,246 - ABID97_RS08325 0.20 -0.0
1,750,546 + ABID97_RS08325 0.84 -0.3
1,750,547 - ABID97_RS08325 0.84 -0.1
1,750,548 + ABID97_RS08325 0.85 -0.1
1,750,548 + ABID97_RS08325 0.85 -0.2
1,750,548 + ABID97_RS08325 0.85 -0.3
1,750,549 - ABID97_RS08325 0.85 +1.5
1,750,776 + ABID97_RS08330 0.22 -0.8
1,750,776 + ABID97_RS08330 0.22 -0.8
1,750,905 + ABID97_RS08330 0.41 -2.0
1,750,905 + ABID97_RS08330 0.41 -1.4
1,750,905 + ABID97_RS08330 0.41 -0.0
1,750,905 + ABID97_RS08330 0.41 -1.1
1,750,905 + ABID97_RS08330 0.41 -0.4
1,750,905 + ABID97_RS08330 0.41 -1.7
1,750,906 - ABID97_RS08330 0.41 -0.6
1,750,906 - ABID97_RS08330 0.41 -1.0
1,750,934 + ABID97_RS08330 0.45 +0.1
1,750,935 - ABID97_RS08330 0.45 -1.2
1,751,026 - ABID97_RS08330 0.59 -0.3
1,751,026 - ABID97_RS08330 0.59 -1.2
1,751,175 + ABID97_RS08330 0.81 -0.9
1,751,175 + ABID97_RS08330 0.81 -1.2
1,751,175 + ABID97_RS08330 0.81 -1.0
1,751,175 + ABID97_RS08330 0.81 +0.9
1,751,176 - ABID97_RS08330 0.81 -1.1
1,751,176 - ABID97_RS08330 0.81 -1.1
1,751,176 - ABID97_RS08330 0.81 -1.8
1,751,176 - ABID97_RS08330 0.81 -2.0
1,751,176 - ABID97_RS08330 0.81 -1.3
1,751,301 + -1.2
1,751,301 + -0.4
1,751,301 + -0.9
1,751,301 + -1.4
1,751,301 + -1.0
1,751,302 - +1.9
1,751,302 - +1.6
1,751,305 + -0.9
1,751,306 - +3.3
1,752,208 + ABID97_RS08340 0.19 +1.8
1,752,209 - ABID97_RS08340 0.19 +2.3
1,752,209 - ABID97_RS08340 0.19 +1.5
1,752,212 + ABID97_RS08340 0.19 +1.8
1,752,212 + ABID97_RS08340 0.19 +2.2
1,752,212 + ABID97_RS08340 0.19 +0.2
1,752,212 + ABID97_RS08340 0.19 +1.9
1,752,212 + ABID97_RS08340 0.19 +3.0
1,752,213 - ABID97_RS08340 0.19 +2.0
1,752,213 - ABID97_RS08340 0.19 +2.7
1,752,213 - ABID97_RS08340 0.19 +2.3
1,752,213 - ABID97_RS08340 0.19 +2.2
1,752,213 - ABID97_RS08340 0.19 +2.2
1,752,213 - ABID97_RS08340 0.19 +2.6

Or see this region's nucleotide sequence