Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07870

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS07865 and ABID97_RS07870 are separated by 63 nucleotidesABID97_RS07870 and ABID97_RS07875 are separated by 15 nucleotidesABID97_RS07875 and ABID97_RS07880 are separated by 41 nucleotides ABID97_RS07865: ABID97_RS07865 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 1,653,062 to 1,654,126 _RS07865 ABID97_RS07870: ABID97_RS07870 - SDR family oxidoreductase, at 1,654,190 to 1,655,122 _RS07870 ABID97_RS07875: ABID97_RS07875 - tRNA-Leu, at 1,655,138 to 1,655,222 _RS07875 ABID97_RS07880: ABID97_RS07880 - cysteine synthase CysM, at 1,655,264 to 1,656,166 _RS07880 Position (kb) 1654 1655 1656Strain fitness (log2 ratio) -2 -1 0 1 2at 1653.348 kb on + strand, within ABID97_RS07865at 1653.348 kb on + strand, within ABID97_RS07865at 1653.348 kb on + strand, within ABID97_RS07865at 1653.349 kb on - strand, within ABID97_RS07865at 1653.349 kb on - strand, within ABID97_RS07865at 1653.378 kb on + strand, within ABID97_RS07865at 1653.378 kb on + strand, within ABID97_RS07865at 1653.378 kb on + strand, within ABID97_RS07865at 1653.378 kb on + strand, within ABID97_RS07865at 1653.378 kb on + strand, within ABID97_RS07865at 1653.655 kb on - strand, within ABID97_RS07865at 1653.655 kb on - strand, within ABID97_RS07865at 1653.693 kb on + strand, within ABID97_RS07865at 1653.694 kb on - strand, within ABID97_RS07865at 1653.999 kb on + strand, within ABID97_RS07865at 1653.999 kb on + strand, within ABID97_RS07865at 1654.000 kb on - strand, within ABID97_RS07865at 1654.130 kb on + strandat 1654.204 kb on + strandat 1654.204 kb on + strandat 1654.204 kb on + strandat 1654.550 kb on + strand, within ABID97_RS07870at 1654.551 kb on - strand, within ABID97_RS07870at 1654.724 kb on + strand, within ABID97_RS07870at 1654.724 kb on + strand, within ABID97_RS07870at 1654.724 kb on + strand, within ABID97_RS07870at 1654.725 kb on - strand, within ABID97_RS07870at 1654.725 kb on - strand, within ABID97_RS07870at 1654.725 kb on - strand, within ABID97_RS07870at 1654.725 kb on - strand, within ABID97_RS07870at 1654.725 kb on - strand, within ABID97_RS07870at 1654.725 kb on - strand, within ABID97_RS07870at 1654.725 kb on - strand, within ABID97_RS07870at 1654.725 kb on - strand, within ABID97_RS07870at 1654.922 kb on + strand, within ABID97_RS07870at 1654.923 kb on - strand, within ABID97_RS07870at 1654.923 kb on - strand, within ABID97_RS07870at 1654.923 kb on - strand, within ABID97_RS07870at 1654.946 kb on + strand, within ABID97_RS07870at 1654.946 kb on + strand, within ABID97_RS07870at 1654.946 kb on + strand, within ABID97_RS07870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
1,653,348 + ABID97_RS07865 0.27 -0.4
1,653,348 + ABID97_RS07865 0.27 -0.7
1,653,348 + ABID97_RS07865 0.27 -0.4
1,653,349 - ABID97_RS07865 0.27 -1.4
1,653,349 - ABID97_RS07865 0.27 +0.5
1,653,378 + ABID97_RS07865 0.30 -0.6
1,653,378 + ABID97_RS07865 0.30 +0.3
1,653,378 + ABID97_RS07865 0.30 -0.9
1,653,378 + ABID97_RS07865 0.30 -0.1
1,653,378 + ABID97_RS07865 0.30 +1.8
1,653,655 - ABID97_RS07865 0.56 -0.5
1,653,655 - ABID97_RS07865 0.56 -0.3
1,653,693 + ABID97_RS07865 0.59 +0.3
1,653,694 - ABID97_RS07865 0.59 -0.4
1,653,999 + ABID97_RS07865 0.88 -0.3
1,653,999 + ABID97_RS07865 0.88 +0.0
1,654,000 - ABID97_RS07865 0.88 -0.2
1,654,130 + -0.0
1,654,204 + -0.8
1,654,204 + +2.5
1,654,204 + -2.5
1,654,550 + ABID97_RS07870 0.39 -1.4
1,654,551 - ABID97_RS07870 0.39 -2.4
1,654,724 + ABID97_RS07870 0.57 -1.0
1,654,724 + ABID97_RS07870 0.57 -1.2
1,654,724 + ABID97_RS07870 0.57 -1.6
1,654,725 - ABID97_RS07870 0.57 -0.5
1,654,725 - ABID97_RS07870 0.57 -1.5
1,654,725 - ABID97_RS07870 0.57 -1.2
1,654,725 - ABID97_RS07870 0.57 -1.1
1,654,725 - ABID97_RS07870 0.57 -0.4
1,654,725 - ABID97_RS07870 0.57 -1.1
1,654,725 - ABID97_RS07870 0.57 -1.2
1,654,725 - ABID97_RS07870 0.57 -1.4
1,654,922 + ABID97_RS07870 0.78 -0.7
1,654,923 - ABID97_RS07870 0.79 -1.4
1,654,923 - ABID97_RS07870 0.79 -1.7
1,654,923 - ABID97_RS07870 0.79 -1.6
1,654,946 + ABID97_RS07870 0.81 -1.3
1,654,946 + ABID97_RS07870 0.81 +0.0
1,654,946 + ABID97_RS07870 0.81 -0.6

Or see this region's nucleotide sequence