Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07295

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07290 and ABID97_RS07295 are separated by 7 nucleotidesABID97_RS07295 and ABID97_RS07300 overlap by 4 nucleotidesABID97_RS07300 and ABID97_RS07305 are separated by 72 nucleotides ABID97_RS07290: ABID97_RS07290 - aspartate--tRNA ligase, at 1,546,130 to 1,547,935 _RS07290 ABID97_RS07295: ABID97_RS07295 - dihydroneopterin triphosphate diphosphatase, at 1,547,943 to 1,548,416 _RS07295 ABID97_RS07300: ABID97_RS07300 - endonuclease/exonuclease/phosphatase family protein, at 1,548,413 to 1,549,168 _RS07300 ABID97_RS07305: ABID97_RS07305 - GTP cyclohydrolase I, at 1,549,241 to 1,549,972 _RS07305 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1548.198 kb on + strand, within ABID97_RS07295at 1548.199 kb on - strand, within ABID97_RS07295at 1548.205 kb on + strand, within ABID97_RS07295at 1548.205 kb on + strand, within ABID97_RS07295at 1548.205 kb on + strand, within ABID97_RS07295at 1548.205 kb on + strand, within ABID97_RS07295at 1548.205 kb on + strand, within ABID97_RS07295at 1548.206 kb on - strand, within ABID97_RS07295at 1548.206 kb on - strand, within ABID97_RS07295at 1548.206 kb on - strand, within ABID97_RS07295at 1548.206 kb on - strand, within ABID97_RS07295at 1548.206 kb on - strand, within ABID97_RS07295at 1548.206 kb on - strand, within ABID97_RS07295at 1548.208 kb on - strand, within ABID97_RS07295at 1548.229 kb on - strand, within ABID97_RS07295at 1548.229 kb on - strand, within ABID97_RS07295at 1548.449 kb on + strandat 1548.450 kb on - strandat 1548.450 kb on - strandat 1548.644 kb on + strand, within ABID97_RS07300at 1548.645 kb on - strand, within ABID97_RS07300at 1548.645 kb on - strand, within ABID97_RS07300at 1548.657 kb on - strand, within ABID97_RS07300at 1548.657 kb on - strand, within ABID97_RS07300at 1549.022 kb on + strand, within ABID97_RS07300at 1549.229 kb on + strandat 1549.229 kb on + strandat 1549.229 kb on + strandat 1549.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,548,198 + ABID97_RS07295 0.54 +1.0
1,548,199 - ABID97_RS07295 0.54 +1.8
1,548,205 + ABID97_RS07295 0.55 +0.3
1,548,205 + ABID97_RS07295 0.55 +1.1
1,548,205 + ABID97_RS07295 0.55 +1.0
1,548,205 + ABID97_RS07295 0.55 +0.3
1,548,205 + ABID97_RS07295 0.55 +0.3
1,548,206 - ABID97_RS07295 0.55 +1.8
1,548,206 - ABID97_RS07295 0.55 +2.3
1,548,206 - ABID97_RS07295 0.55 +1.9
1,548,206 - ABID97_RS07295 0.55 +1.8
1,548,206 - ABID97_RS07295 0.55 +1.7
1,548,206 - ABID97_RS07295 0.55 +1.4
1,548,208 - ABID97_RS07295 0.56 +1.7
1,548,229 - ABID97_RS07295 0.60 +1.1
1,548,229 - ABID97_RS07295 0.60 +1.6
1,548,449 + +1.2
1,548,450 - +2.2
1,548,450 - +2.8
1,548,644 + ABID97_RS07300 0.31 +0.6
1,548,645 - ABID97_RS07300 0.31 +2.5
1,548,645 - ABID97_RS07300 0.31 +2.3
1,548,657 - ABID97_RS07300 0.32 +2.8
1,548,657 - ABID97_RS07300 0.32 +1.5
1,549,022 + ABID97_RS07300 0.81 +1.9
1,549,229 + +5.3
1,549,229 + +4.4
1,549,229 + +4.8
1,549,230 - +4.5

Or see this region's nucleotide sequence