Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06505 and ABID97_RS06510 are separated by 116 nucleotides ABID97_RS06510 and ABID97_RS06515 are separated by 8 nucleotides ABID97_RS06515 and ABID97_RS06520 are separated by 26 nucleotides
ABID97_RS06505: ABID97_RS06505 - tRNA 2-thiocytidine(32) synthetase TtcA, at 1,377,626 to 1,378,501
_RS06505
ABID97_RS06510: ABID97_RS06510 - dihydroneopterin aldolase, at 1,378,618 to 1,378,992
_RS06510
ABID97_RS06515: ABID97_RS06515 - SDR family oxidoreductase, at 1,379,001 to 1,379,789
_RS06515
ABID97_RS06520: ABID97_RS06520 - SAM-dependent methyltransferase, at 1,379,816 to 1,380,928
_RS06520
Position (kb) 1379
1380 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 1378.126 kb on - strand, within ABID97_RS06505 at 1378.203 kb on + strand, within ABID97_RS06505 at 1378.203 kb on + strand, within ABID97_RS06505 at 1378.203 kb on + strand, within ABID97_RS06505 at 1378.203 kb on + strand, within ABID97_RS06505 at 1378.204 kb on - strand, within ABID97_RS06505 at 1378.204 kb on - strand, within ABID97_RS06505 at 1378.204 kb on - strand, within ABID97_RS06505 at 1378.204 kb on - strand, within ABID97_RS06505 at 1378.204 kb on - strand, within ABID97_RS06505 at 1378.204 kb on - strand, within ABID97_RS06505 at 1378.251 kb on + strand, within ABID97_RS06505 at 1378.368 kb on + strand, within ABID97_RS06505 at 1378.368 kb on + strand, within ABID97_RS06505 at 1378.368 kb on + strand, within ABID97_RS06505 at 1378.368 kb on + strand, within ABID97_RS06505 at 1378.369 kb on - strand, within ABID97_RS06505 at 1378.428 kb on + strand at 1378.429 kb on - strand at 1379.296 kb on + strand, within ABID97_RS06515 at 1379.296 kb on + strand, within ABID97_RS06515 at 1379.296 kb on + strand, within ABID97_RS06515 at 1379.297 kb on - strand, within ABID97_RS06515 at 1379.452 kb on + strand, within ABID97_RS06515 at 1379.452 kb on + strand, within ABID97_RS06515 at 1379.452 kb on + strand, within ABID97_RS06515 at 1379.452 kb on + strand, within ABID97_RS06515 at 1379.452 kb on + strand, within ABID97_RS06515 at 1379.453 kb on - strand, within ABID97_RS06515 at 1379.453 kb on - strand, within ABID97_RS06515 at 1379.453 kb on - strand, within ABID97_RS06515 at 1379.453 kb on - strand, within ABID97_RS06515 at 1379.762 kb on + strand at 1379.841 kb on + strand at 1379.841 kb on + strand at 1379.842 kb on - strand at 1379.930 kb on + strand, within ABID97_RS06520 at 1379.931 kb on - strand, within ABID97_RS06520 at 1379.951 kb on + strand, within ABID97_RS06520 at 1380.459 kb on - strand, within ABID97_RS06520 at 1380.567 kb on - strand, within ABID97_RS06520 at 1380.570 kb on - strand, within ABID97_RS06520 at 1380.728 kb on + strand, within ABID97_RS06520
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 1,378,126 - ABID97_RS06505 0.57 +0.3 1,378,203 + ABID97_RS06505 0.66 +0.1 1,378,203 + ABID97_RS06505 0.66 -1.4 1,378,203 + ABID97_RS06505 0.66 -0.1 1,378,203 + ABID97_RS06505 0.66 -0.2 1,378,204 - ABID97_RS06505 0.66 -0.5 1,378,204 - ABID97_RS06505 0.66 -0.4 1,378,204 - ABID97_RS06505 0.66 -0.4 1,378,204 - ABID97_RS06505 0.66 +0.8 1,378,204 - ABID97_RS06505 0.66 -0.1 1,378,204 - ABID97_RS06505 0.66 -0.6 1,378,251 + ABID97_RS06505 0.71 +0.6 1,378,368 + ABID97_RS06505 0.85 -0.9 1,378,368 + ABID97_RS06505 0.85 +0.1 1,378,368 + ABID97_RS06505 0.85 -1.1 1,378,368 + ABID97_RS06505 0.85 +0.3 1,378,369 - ABID97_RS06505 0.85 -0.3 1,378,428 + +0.2 1,378,429 - +0.0 1,379,296 + ABID97_RS06515 0.37 -5.8 1,379,296 + ABID97_RS06515 0.37 -1.9 1,379,296 + ABID97_RS06515 0.37 -4.7 1,379,297 - ABID97_RS06515 0.38 -3.7 1,379,452 + ABID97_RS06515 0.57 -3.5 1,379,452 + ABID97_RS06515 0.57 -2.1 1,379,452 + ABID97_RS06515 0.57 -3.9 1,379,452 + ABID97_RS06515 0.57 -4.8 1,379,452 + ABID97_RS06515 0.57 -4.0 1,379,453 - ABID97_RS06515 0.57 -0.9 1,379,453 - ABID97_RS06515 0.57 -3.0 1,379,453 - ABID97_RS06515 0.57 -3.4 1,379,453 - ABID97_RS06515 0.57 -4.8 1,379,762 + -4.7 1,379,841 + +2.9 1,379,841 + +2.4 1,379,842 - +2.7 1,379,930 + ABID97_RS06520 0.10 +2.9 1,379,931 - ABID97_RS06520 0.10 +2.3 1,379,951 + ABID97_RS06520 0.12 +1.9 1,380,459 - ABID97_RS06520 0.58 +2.7 1,380,567 - ABID97_RS06520 0.67 +3.5 1,380,570 - ABID97_RS06520 0.68 +3.5 1,380,728 + ABID97_RS06520 0.82 +2.3
Or see this region's nucleotide sequence