Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04580

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04575 and ABID97_RS04580 overlap by 8 nucleotidesABID97_RS04580 and ABID97_RS04585 are separated by 123 nucleotides ABID97_RS04575: ABID97_RS04575 - NAD/NADP octopine/nopaline dehydrogenase family protein, at 951,250 to 952,329 _RS04575 ABID97_RS04580: ABID97_RS04580 - tripartite tricarboxylate transporter substrate binding protein, at 952,322 to 953,299 _RS04580 ABID97_RS04585: ABID97_RS04585 - leucine--tRNA ligase, at 953,423 to 956,053 _RS04585 Position (kb) 952 953 954Strain fitness (log2 ratio) -1 0 1at 951.428 kb on + strand, within ABID97_RS04575at 951.450 kb on - strand, within ABID97_RS04575at 951.662 kb on + strand, within ABID97_RS04575at 951.663 kb on - strand, within ABID97_RS04575at 951.663 kb on - strand, within ABID97_RS04575at 951.971 kb on + strand, within ABID97_RS04575at 951.972 kb on - strand, within ABID97_RS04575at 951.977 kb on + strand, within ABID97_RS04575at 951.977 kb on + strand, within ABID97_RS04575at 951.977 kb on + strand, within ABID97_RS04575at 951.978 kb on - strand, within ABID97_RS04575at 952.833 kb on + strand, within ABID97_RS04580at 952.834 kb on - strand, within ABID97_RS04580at 952.834 kb on - strand, within ABID97_RS04580at 953.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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951,428 + ABID97_RS04575 0.16 +0.1
951,450 - ABID97_RS04575 0.19 -0.2
951,662 + ABID97_RS04575 0.38 +0.7
951,663 - ABID97_RS04575 0.38 -0.3
951,663 - ABID97_RS04575 0.38 +0.6
951,971 + ABID97_RS04575 0.67 +0.2
951,972 - ABID97_RS04575 0.67 -0.3
951,977 + ABID97_RS04575 0.67 -0.7
951,977 + ABID97_RS04575 0.67 +0.1
951,977 + ABID97_RS04575 0.67 +0.7
951,978 - ABID97_RS04575 0.67 -0.5
952,833 + ABID97_RS04580 0.52 +1.1
952,834 - ABID97_RS04580 0.52 +1.2
952,834 - ABID97_RS04580 0.52 -0.0
953,364 - -0.7

Or see this region's nucleotide sequence