Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03470 and ABID97_RS03475 are separated by 52 nucleotides ABID97_RS03475 and ABID97_RS03480 overlap by 4 nucleotides ABID97_RS03480 and ABID97_RS03485 overlap by 4 nucleotides
ABID97_RS03470: ABID97_RS03470 - methionine synthase, at 705,533 to 708,247
_RS03470
ABID97_RS03475: ABID97_RS03475 - hypothetical protein, at 708,300 to 710,099
_RS03475
ABID97_RS03480: ABID97_RS03480 - glycosyltransferase family 2 protein, at 710,096 to 711,073
_RS03480
ABID97_RS03485: ABID97_RS03485 - GtrA family protein, at 711,070 to 711,459
_RS03485
Position (kb) 708
709
710
711 Strain fitness (log2 ratio) -1
0
1
2
3 at 707.321 kb on + strand, within ABID97_RS03470 at 707.322 kb on - strand, within ABID97_RS03470 at 707.322 kb on - strand, within ABID97_RS03470 at 707.393 kb on + strand, within ABID97_RS03470 at 707.393 kb on + strand, within ABID97_RS03470 at 707.393 kb on + strand, within ABID97_RS03470 at 707.393 kb on + strand, within ABID97_RS03470 at 707.393 kb on + strand, within ABID97_RS03470 at 707.393 kb on + strand, within ABID97_RS03470 at 707.394 kb on - strand, within ABID97_RS03470 at 707.394 kb on - strand, within ABID97_RS03470 at 707.394 kb on - strand, within ABID97_RS03470 at 707.492 kb on + strand, within ABID97_RS03470 at 707.493 kb on - strand, within ABID97_RS03470 at 707.493 kb on - strand, within ABID97_RS03470 at 707.493 kb on - strand, within ABID97_RS03470 at 707.607 kb on - strand, within ABID97_RS03470 at 707.607 kb on - strand, within ABID97_RS03470 at 707.607 kb on - strand, within ABID97_RS03470 at 707.607 kb on - strand, within ABID97_RS03470 at 707.645 kb on + strand, within ABID97_RS03470 at 707.750 kb on + strand, within ABID97_RS03470 at 707.750 kb on + strand, within ABID97_RS03470 at 707.750 kb on + strand, within ABID97_RS03470 at 707.750 kb on + strand, within ABID97_RS03470 at 707.751 kb on - strand, within ABID97_RS03470 at 707.751 kb on - strand, within ABID97_RS03470 at 707.751 kb on - strand, within ABID97_RS03470 at 707.751 kb on - strand, within ABID97_RS03470 at 707.751 kb on - strand, within ABID97_RS03470 at 707.751 kb on - strand, within ABID97_RS03470 at 707.804 kb on + strand, within ABID97_RS03470 at 707.804 kb on + strand, within ABID97_RS03470 at 707.804 kb on + strand, within ABID97_RS03470 at 707.805 kb on - strand, within ABID97_RS03470 at 707.805 kb on - strand, within ABID97_RS03470 at 707.805 kb on - strand, within ABID97_RS03470 at 707.805 kb on - strand, within ABID97_RS03470 at 707.805 kb on - strand, within ABID97_RS03470 at 707.805 kb on - strand, within ABID97_RS03470 at 707.828 kb on + strand, within ABID97_RS03470 at 707.828 kb on + strand, within ABID97_RS03470 at 707.828 kb on + strand, within ABID97_RS03470 at 707.921 kb on + strand, within ABID97_RS03470 at 707.921 kb on + strand, within ABID97_RS03470 at 707.921 kb on + strand, within ABID97_RS03470 at 707.922 kb on - strand, within ABID97_RS03470 at 708.088 kb on + strand at 708.088 kb on + strand at 708.088 kb on + strand at 708.088 kb on + strand at 708.089 kb on - strand at 708.120 kb on - strand at 708.143 kb on + strand at 708.144 kb on - strand at 708.287 kb on + strand at 708.287 kb on + strand at 708.288 kb on - strand at 708.288 kb on - strand at 708.702 kb on + strand, within ABID97_RS03475 at 708.702 kb on + strand, within ABID97_RS03475 at 708.702 kb on + strand, within ABID97_RS03475 at 708.702 kb on + strand, within ABID97_RS03475 at 708.702 kb on + strand, within ABID97_RS03475 at 708.703 kb on - strand, within ABID97_RS03475 at 708.715 kb on - strand, within ABID97_RS03475 at 708.784 kb on - strand, within ABID97_RS03475 at 708.789 kb on + strand, within ABID97_RS03475 at 708.789 kb on + strand, within ABID97_RS03475 at 708.789 kb on + strand, within ABID97_RS03475 at 708.789 kb on + strand, within ABID97_RS03475 at 708.790 kb on - strand, within ABID97_RS03475 at 708.790 kb on - strand, within ABID97_RS03475 at 708.790 kb on - strand, within ABID97_RS03475 at 708.790 kb on - strand, within ABID97_RS03475 at 708.790 kb on - strand, within ABID97_RS03475 at 708.790 kb on - strand, within ABID97_RS03475 at 708.801 kb on + strand, within ABID97_RS03475 at 708.802 kb on - strand, within ABID97_RS03475 at 708.802 kb on - strand, within ABID97_RS03475 at 708.960 kb on + strand, within ABID97_RS03475 at 708.976 kb on + strand, within ABID97_RS03475 at 708.976 kb on + strand, within ABID97_RS03475 at 708.976 kb on + strand, within ABID97_RS03475 at 708.976 kb on + strand, within ABID97_RS03475 at 708.977 kb on - strand, within ABID97_RS03475 at 709.222 kb on - strand, within ABID97_RS03475 at 709.228 kb on - strand, within ABID97_RS03475 at 709.228 kb on - strand, within ABID97_RS03475 at 709.315 kb on - strand, within ABID97_RS03475 at 709.450 kb on - strand, within ABID97_RS03475 at 709.450 kb on - strand, within ABID97_RS03475 at 709.482 kb on + strand, within ABID97_RS03475 at 709.788 kb on + strand, within ABID97_RS03475 at 709.803 kb on + strand, within ABID97_RS03475 at 709.803 kb on + strand, within ABID97_RS03475 at 709.804 kb on - strand, within ABID97_RS03475 at 709.860 kb on + strand, within ABID97_RS03475 at 709.861 kb on - strand, within ABID97_RS03475 at 709.861 kb on - strand, within ABID97_RS03475 at 709.861 kb on - strand, within ABID97_RS03475 at 709.861 kb on - strand, within ABID97_RS03475 at 709.861 kb on - strand, within ABID97_RS03475 at 709.861 kb on - strand, within ABID97_RS03475 at 709.863 kb on + strand, within ABID97_RS03475 at 710.049 kb on + strand at 710.049 kb on + strand at 710.050 kb on - strand at 710.050 kb on - strand at 710.162 kb on + strand at 710.162 kb on + strand at 710.163 kb on - strand at 710.163 kb on - strand at 710.163 kb on - strand at 710.163 kb on - strand at 710.366 kb on + strand, within ABID97_RS03480 at 710.366 kb on + strand, within ABID97_RS03480 at 710.366 kb on + strand, within ABID97_RS03480 at 710.367 kb on - strand, within ABID97_RS03480 at 710.367 kb on - strand, within ABID97_RS03480 at 710.393 kb on + strand, within ABID97_RS03480 at 710.393 kb on + strand, within ABID97_RS03480 at 710.394 kb on - strand, within ABID97_RS03480 at 710.691 kb on - strand, within ABID97_RS03480 at 710.691 kb on - strand, within ABID97_RS03480 at 710.711 kb on + strand, within ABID97_RS03480 at 710.711 kb on + strand, within ABID97_RS03480 at 710.711 kb on + strand, within ABID97_RS03480 at 710.711 kb on + strand, within ABID97_RS03480 at 710.712 kb on - strand, within ABID97_RS03480 at 710.712 kb on - strand, within ABID97_RS03480 at 710.712 kb on - strand, within ABID97_RS03480 at 710.888 kb on + strand, within ABID97_RS03480 at 710.889 kb on - strand at 710.889 kb on - strand, within ABID97_RS03480 at 710.889 kb on - strand, within ABID97_RS03480 at 710.889 kb on - strand, within ABID97_RS03480 at 710.889 kb on - strand, within ABID97_RS03480 at 710.889 kb on - strand, within ABID97_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 707,321 + ABID97_RS03470 0.66 +0.9 707,322 - ABID97_RS03470 0.66 -0.2 707,322 - ABID97_RS03470 0.66 +2.1 707,393 + ABID97_RS03470 0.69 +0.5 707,393 + ABID97_RS03470 0.69 +0.8 707,393 + ABID97_RS03470 0.69 +0.8 707,393 + ABID97_RS03470 0.69 +1.2 707,393 + ABID97_RS03470 0.69 +0.9 707,393 + ABID97_RS03470 0.69 +0.6 707,394 - ABID97_RS03470 0.69 +1.3 707,394 - ABID97_RS03470 0.69 +1.1 707,394 - ABID97_RS03470 0.69 +0.7 707,492 + ABID97_RS03470 0.72 +1.3 707,493 - ABID97_RS03470 0.72 +1.3 707,493 - ABID97_RS03470 0.72 +2.1 707,493 - ABID97_RS03470 0.72 +1.0 707,607 - ABID97_RS03470 0.76 +0.7 707,607 - ABID97_RS03470 0.76 +1.1 707,607 - ABID97_RS03470 0.76 +1.2 707,607 - ABID97_RS03470 0.76 +1.1 707,645 + ABID97_RS03470 0.78 +2.1 707,750 + ABID97_RS03470 0.82 +1.0 707,750 + ABID97_RS03470 0.82 +0.9 707,750 + ABID97_RS03470 0.82 +2.0 707,750 + ABID97_RS03470 0.82 +1.3 707,751 - ABID97_RS03470 0.82 +0.3 707,751 - ABID97_RS03470 0.82 +1.2 707,751 - ABID97_RS03470 0.82 +1.2 707,751 - ABID97_RS03470 0.82 +1.1 707,751 - ABID97_RS03470 0.82 +0.7 707,751 - ABID97_RS03470 0.82 +1.0 707,804 + ABID97_RS03470 0.84 +1.3 707,804 + ABID97_RS03470 0.84 -0.0 707,804 + ABID97_RS03470 0.84 +2.8 707,805 - ABID97_RS03470 0.84 +0.7 707,805 - ABID97_RS03470 0.84 +1.1 707,805 - ABID97_RS03470 0.84 +2.9 707,805 - ABID97_RS03470 0.84 +1.2 707,805 - ABID97_RS03470 0.84 +0.7 707,805 - ABID97_RS03470 0.84 +1.2 707,828 + ABID97_RS03470 0.85 +0.8 707,828 + ABID97_RS03470 0.85 +1.3 707,828 + ABID97_RS03470 0.85 +1.3 707,921 + ABID97_RS03470 0.88 +1.2 707,921 + ABID97_RS03470 0.88 +1.2 707,921 + ABID97_RS03470 0.88 +1.0 707,922 - ABID97_RS03470 0.88 +0.9 708,088 + +1.2 708,088 + +1.6 708,088 + +1.5 708,088 + +1.1 708,089 - +0.9 708,120 - +0.9 708,143 + +1.4 708,144 - +0.8 708,287 + -0.3 708,287 + -0.7 708,288 - -0.3 708,288 - +2.4 708,702 + ABID97_RS03475 0.22 +1.2 708,702 + ABID97_RS03475 0.22 +1.6 708,702 + ABID97_RS03475 0.22 +2.1 708,702 + ABID97_RS03475 0.22 +2.1 708,702 + ABID97_RS03475 0.22 +1.8 708,703 - ABID97_RS03475 0.22 +0.4 708,715 - ABID97_RS03475 0.23 +0.5 708,784 - ABID97_RS03475 0.27 +1.0 708,789 + ABID97_RS03475 0.27 +0.6 708,789 + ABID97_RS03475 0.27 +1.0 708,789 + ABID97_RS03475 0.27 +0.7 708,789 + ABID97_RS03475 0.27 +0.5 708,790 - ABID97_RS03475 0.27 +1.3 708,790 - ABID97_RS03475 0.27 +1.6 708,790 - ABID97_RS03475 0.27 +1.6 708,790 - ABID97_RS03475 0.27 +0.6 708,790 - ABID97_RS03475 0.27 +0.5 708,790 - ABID97_RS03475 0.27 +1.0 708,801 + ABID97_RS03475 0.28 -0.0 708,802 - ABID97_RS03475 0.28 +1.1 708,802 - ABID97_RS03475 0.28 +1.1 708,960 + ABID97_RS03475 0.37 +1.9 708,976 + ABID97_RS03475 0.38 -0.5 708,976 + ABID97_RS03475 0.38 +1.6 708,976 + ABID97_RS03475 0.38 +2.2 708,976 + ABID97_RS03475 0.38 +1.6 708,977 - ABID97_RS03475 0.38 +1.5 709,222 - ABID97_RS03475 0.51 +1.3 709,228 - ABID97_RS03475 0.52 +0.6 709,228 - ABID97_RS03475 0.52 +2.3 709,315 - ABID97_RS03475 0.56 +3.7 709,450 - ABID97_RS03475 0.64 +1.0 709,450 - ABID97_RS03475 0.64 +1.0 709,482 + ABID97_RS03475 0.66 +1.6 709,788 + ABID97_RS03475 0.83 +2.2 709,803 + ABID97_RS03475 0.83 +1.7 709,803 + ABID97_RS03475 0.83 +2.4 709,804 - ABID97_RS03475 0.84 +1.2 709,860 + ABID97_RS03475 0.87 +1.8 709,861 - ABID97_RS03475 0.87 +0.7 709,861 - ABID97_RS03475 0.87 +2.3 709,861 - ABID97_RS03475 0.87 +1.3 709,861 - ABID97_RS03475 0.87 +0.3 709,861 - ABID97_RS03475 0.87 +0.8 709,861 - ABID97_RS03475 0.87 +1.1 709,863 + ABID97_RS03475 0.87 +2.2 710,049 + +1.7 710,049 + +1.1 710,050 - +2.7 710,050 - +2.5 710,162 + -0.1 710,162 + -0.8 710,163 - +0.2 710,163 - +0.3 710,163 - -1.0 710,163 - -1.4 710,366 + ABID97_RS03480 0.28 -0.5 710,366 + ABID97_RS03480 0.28 -0.3 710,366 + ABID97_RS03480 0.28 -0.7 710,367 - ABID97_RS03480 0.28 +0.1 710,367 - ABID97_RS03480 0.28 -0.6 710,393 + ABID97_RS03480 0.30 +0.3 710,393 + ABID97_RS03480 0.30 -0.2 710,394 - ABID97_RS03480 0.30 +0.0 710,691 - ABID97_RS03480 0.61 -0.4 710,691 - ABID97_RS03480 0.61 -0.2 710,711 + ABID97_RS03480 0.63 -0.0 710,711 + ABID97_RS03480 0.63 +2.8 710,711 + ABID97_RS03480 0.63 +0.2 710,711 + ABID97_RS03480 0.63 -0.6 710,712 - ABID97_RS03480 0.63 +0.4 710,712 - ABID97_RS03480 0.63 +0.0 710,712 - ABID97_RS03480 0.63 -0.2 710,888 + ABID97_RS03480 0.81 +0.1 710,889 - +2.1 710,889 - ABID97_RS03480 0.81 +2.1 710,889 - ABID97_RS03480 0.81 +0.8 710,889 - ABID97_RS03480 0.81 -0.2 710,889 - ABID97_RS03480 0.81 -0.1 710,889 - ABID97_RS03480 0.81 +0.6
Or see this region's nucleotide sequence