Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03420

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03415 and ABID97_RS03420 are separated by 60 nucleotidesABID97_RS03420 and ABID97_RS03425 are separated by 24 nucleotides ABID97_RS03415: ABID97_RS03415 - histidine utilization repressor, at 693,672 to 694,409 _RS03415 ABID97_RS03420: ABID97_RS03420 - histidine ammonia-lyase, at 694,470 to 696,020 _RS03420 ABID97_RS03425: ABID97_RS03425 - urocanate hydratase, at 696,045 to 697,763 _RS03425 Position (kb) 694 695 696 697Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 693.857 kb on + strand, within ABID97_RS03415at 694.110 kb on + strand, within ABID97_RS03415at 694.111 kb on - strand, within ABID97_RS03415at 694.176 kb on + strand, within ABID97_RS03415at 694.177 kb on - strand, within ABID97_RS03415at 694.362 kb on - strandat 694.362 kb on - strandat 694.456 kb on - strandat 694.992 kb on - strand, within ABID97_RS03420at 695.134 kb on + strand, within ABID97_RS03420at 696.228 kb on + strand, within ABID97_RS03425at 696.267 kb on + strand, within ABID97_RS03425at 696.459 kb on + strand, within ABID97_RS03425at 696.460 kb on - strand, within ABID97_RS03425at 696.555 kb on + strand, within ABID97_RS03425at 696.555 kb on + strand, within ABID97_RS03425at 696.556 kb on - strand, within ABID97_RS03425at 696.705 kb on + strand, within ABID97_RS03425at 696.907 kb on - strand, within ABID97_RS03425

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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693,857 + ABID97_RS03415 0.25 -2.9
694,110 + ABID97_RS03415 0.59 -0.8
694,111 - ABID97_RS03415 0.59 -2.9
694,176 + ABID97_RS03415 0.68 -4.6
694,177 - ABID97_RS03415 0.68 -2.2
694,362 - +0.1
694,362 - -2.5
694,456 - +1.4
694,992 - ABID97_RS03420 0.34 -0.1
695,134 + ABID97_RS03420 0.43 +0.5
696,228 + ABID97_RS03425 0.11 -1.4
696,267 + ABID97_RS03425 0.13 -0.6
696,459 + ABID97_RS03425 0.24 -0.7
696,460 - ABID97_RS03425 0.24 +1.2
696,555 + ABID97_RS03425 0.30 -0.8
696,555 + ABID97_RS03425 0.30 -0.4
696,556 - ABID97_RS03425 0.30 -0.8
696,705 + ABID97_RS03425 0.38 -0.4
696,907 - ABID97_RS03425 0.50 -0.2

Or see this region's nucleotide sequence