Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02215

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02205 and ABID97_RS02210 are separated by 90 nucleotidesABID97_RS02210 and ABID97_RS02215 are separated by 217 nucleotidesABID97_RS02215 and ABID97_RS02220 are separated by 29 nucleotides ABID97_RS02205: ABID97_RS02205 - Wzy polymerase domain-containing protein, at 445,476 to 447,167 _RS02205 ABID97_RS02210: ABID97_RS02210 - pilin, at 447,258 to 447,749 _RS02210 ABID97_RS02215: ABID97_RS02215 - 3',5'-cyclic-nucleotide phosphodiesterase, at 447,967 to 448,770 _RS02215 ABID97_RS02220: ABID97_RS02220 - adenylate/guanylate cyclase domain-containing protein, at 448,800 to 451,061 _RS02220 Position (kb) 447 448 449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 446.983 kb on - strand, within ABID97_RS02205at 447.048 kb on + strandat 447.048 kb on + strandat 447.118 kb on + strandat 447.118 kb on + strandat 447.119 kb on - strandat 447.119 kb on - strandat 447.119 kb on - strandat 447.123 kb on + strandat 447.124 kb on - strandat 447.237 kb on + strandat 447.238 kb on - strandat 447.250 kb on - strandat 447.250 kb on - strandat 447.250 kb on - strandat 447.250 kb on - strandat 447.260 kb on - strandat 447.263 kb on + strandat 447.286 kb on + strandat 447.287 kb on - strandat 447.287 kb on - strandat 447.287 kb on - strandat 447.287 kb on - strandat 447.385 kb on + strand, within ABID97_RS02210at 447.385 kb on + strand, within ABID97_RS02210at 447.385 kb on + strand, within ABID97_RS02210at 447.393 kb on - strand, within ABID97_RS02210at 447.437 kb on + strand, within ABID97_RS02210at 447.437 kb on + strand, within ABID97_RS02210at 447.437 kb on + strand, within ABID97_RS02210at 447.438 kb on - strand, within ABID97_RS02210at 447.438 kb on - strand, within ABID97_RS02210at 447.490 kb on + strand, within ABID97_RS02210at 447.490 kb on + strand, within ABID97_RS02210at 447.490 kb on + strand, within ABID97_RS02210at 447.490 kb on + strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.509 kb on + strand, within ABID97_RS02210at 447.510 kb on - strand, within ABID97_RS02210at 447.646 kb on + strand, within ABID97_RS02210at 447.646 kb on + strand, within ABID97_RS02210at 447.646 kb on + strand, within ABID97_RS02210at 447.647 kb on - strand, within ABID97_RS02210at 447.647 kb on - strand, within ABID97_RS02210at 447.683 kb on + strand, within ABID97_RS02210at 447.683 kb on + strand, within ABID97_RS02210at 447.684 kb on - strand, within ABID97_RS02210at 447.684 kb on - strand, within ABID97_RS02210at 447.788 kb on + strandat 447.789 kb on - strandat 447.789 kb on - strandat 447.818 kb on - strandat 447.818 kb on - strandat 447.851 kb on + strandat 447.852 kb on - strandat 447.852 kb on - strandat 447.862 kb on - strandat 448.039 kb on + strandat 448.089 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.109 kb on + strand, within ABID97_RS02215at 448.109 kb on + strand, within ABID97_RS02215at 448.110 kb on - strand, within ABID97_RS02215at 448.879 kb on + strandat 448.879 kb on + strandat 448.879 kb on + strandat 448.879 kb on + strandat 448.879 kb on + strandat 448.879 kb on + strandat 448.880 kb on - strandat 448.880 kb on - strandat 448.880 kb on - strandat 448.880 kb on - strandat 448.880 kb on - strandat 448.888 kb on + strandat 448.888 kb on + strandat 448.888 kb on + strandat 448.889 kb on - strandat 448.889 kb on - strandat 448.889 kb on - strandat 449.056 kb on + strand, within ABID97_RS02220at 449.056 kb on + strand, within ABID97_RS02220at 449.056 kb on + strand, within ABID97_RS02220at 449.057 kb on - strand, within ABID97_RS02220at 449.057 kb on - strand, within ABID97_RS02220at 449.057 kb on - strand, within ABID97_RS02220at 449.167 kb on + strand, within ABID97_RS02220at 449.167 kb on + strand, within ABID97_RS02220at 449.168 kb on - strand, within ABID97_RS02220at 449.227 kb on + strand, within ABID97_RS02220at 449.227 kb on + strand, within ABID97_RS02220at 449.227 kb on + strand, within ABID97_RS02220at 449.227 kb on + strand, within ABID97_RS02220at 449.227 kb on + strand, within ABID97_RS02220at 449.228 kb on - strand, within ABID97_RS02220at 449.228 kb on - strand, within ABID97_RS02220at 449.228 kb on - strand, within ABID97_RS02220at 449.228 kb on - strand, within ABID97_RS02220at 449.228 kb on - strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.443 kb on + strand, within ABID97_RS02220at 449.444 kb on - strand, within ABID97_RS02220at 449.444 kb on - strand, within ABID97_RS02220at 449.444 kb on - strand, within ABID97_RS02220at 449.444 kb on - strand, within ABID97_RS02220at 449.444 kb on - strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.659 kb on + strand, within ABID97_RS02220at 449.660 kb on - strand, within ABID97_RS02220at 449.660 kb on - strand, within ABID97_RS02220at 449.660 kb on - strand, within ABID97_RS02220at 449.660 kb on - strand, within ABID97_RS02220at 449.660 kb on - strand, within ABID97_RS02220at 449.660 kb on - strandat 449.660 kb on - strand, within ABID97_RS02220at 449.660 kb on - strand, within ABID97_RS02220at 449.660 kb on - strand, within ABID97_RS02220at 449.660 kb on - strand, within ABID97_RS02220at 449.710 kb on + strand, within ABID97_RS02220at 449.710 kb on + strand, within ABID97_RS02220at 449.711 kb on - strand, within ABID97_RS02220at 449.711 kb on - strand, within ABID97_RS02220

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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446,983 - ABID97_RS02205 0.89 -1.0
447,048 + +0.2
447,048 + -0.9
447,118 + -1.0
447,118 + -0.4
447,119 - -0.5
447,119 - +0.3
447,119 - -0.1
447,123 + +0.6
447,124 - +0.3
447,237 + -1.1
447,238 - -0.3
447,250 - +1.1
447,250 - -0.4
447,250 - -2.4
447,250 - -0.3
447,260 - +0.7
447,263 + +2.0
447,286 + +1.2
447,287 - +1.0
447,287 - +0.9
447,287 - +1.0
447,287 - +2.4
447,385 + ABID97_RS02210 0.26 +0.7
447,385 + ABID97_RS02210 0.26 +1.7
447,385 + ABID97_RS02210 0.26 +2.2
447,393 - ABID97_RS02210 0.27 +0.8
447,437 + ABID97_RS02210 0.36 +2.0
447,437 + ABID97_RS02210 0.36 +2.1
447,437 + ABID97_RS02210 0.36 +1.8
447,438 - ABID97_RS02210 0.37 +0.7
447,438 - ABID97_RS02210 0.37 +0.6
447,490 + ABID97_RS02210 0.47 +1.3
447,490 + ABID97_RS02210 0.47 +1.3
447,490 + ABID97_RS02210 0.47 +1.5
447,490 + ABID97_RS02210 0.47 +1.2
447,491 - ABID97_RS02210 0.47 +0.1
447,491 - ABID97_RS02210 0.47 +0.4
447,491 - ABID97_RS02210 0.47 +0.6
447,491 - ABID97_RS02210 0.47 +1.1
447,491 - ABID97_RS02210 0.47 +1.1
447,491 - ABID97_RS02210 0.47 +1.5
447,491 - ABID97_RS02210 0.47 +0.7
447,491 - ABID97_RS02210 0.47 +1.0
447,509 + ABID97_RS02210 0.51 +2.3
447,510 - ABID97_RS02210 0.51 +0.9
447,646 + ABID97_RS02210 0.79 +2.5
447,646 + ABID97_RS02210 0.79 +3.0
447,646 + ABID97_RS02210 0.79 +2.7
447,647 - ABID97_RS02210 0.79 +1.3
447,647 - ABID97_RS02210 0.79 +0.6
447,683 + ABID97_RS02210 0.86 +3.1
447,683 + ABID97_RS02210 0.86 +1.8
447,684 - ABID97_RS02210 0.87 +1.2
447,684 - ABID97_RS02210 0.87 +0.9
447,788 + +1.0
447,789 - +0.5
447,789 - +0.1
447,818 - -0.2
447,818 - -1.7
447,851 + +0.6
447,852 - +0.7
447,852 - +0.2
447,862 - -0.6
448,039 + -1.8
448,089 + ABID97_RS02215 0.15 -3.2
448,100 + ABID97_RS02215 0.17 -1.4
448,100 + ABID97_RS02215 0.17 -1.8
448,100 + ABID97_RS02215 0.17 -2.4
448,100 + ABID97_RS02215 0.17 -2.1
448,100 + ABID97_RS02215 0.17 -2.7
448,100 + ABID97_RS02215 0.17 -0.3
448,100 + ABID97_RS02215 0.17 -3.0
448,100 + ABID97_RS02215 0.17 -2.2
448,100 + ABID97_RS02215 0.17 -2.4
448,100 + ABID97_RS02215 0.17 -1.8
448,100 + ABID97_RS02215 0.17 -2.9
448,100 + ABID97_RS02215 0.17 -1.8
448,100 + ABID97_RS02215 0.17 -4.4
448,100 + ABID97_RS02215 0.17 -2.5
448,100 + ABID97_RS02215 0.17 -1.3
448,100 + ABID97_RS02215 0.17 -2.4
448,100 + ABID97_RS02215 0.17 +1.3
448,100 + ABID97_RS02215 0.17 -1.1
448,100 + ABID97_RS02215 0.17 -2.5
448,100 + ABID97_RS02215 0.17 -2.4
448,100 + ABID97_RS02215 0.17 -1.1
448,100 + ABID97_RS02215 0.17 -0.8
448,100 + ABID97_RS02215 0.17 -2.0
448,100 + ABID97_RS02215 0.17 -1.8
448,100 + ABID97_RS02215 0.17 -2.4
448,100 - ABID97_RS02215 0.17 -3.0
448,101 - ABID97_RS02215 0.17 -1.8
448,101 - ABID97_RS02215 0.17 -2.0
448,101 - ABID97_RS02215 0.17 -2.9
448,101 - ABID97_RS02215 0.17 -2.3
448,101 - ABID97_RS02215 0.17 -2.9
448,101 - ABID97_RS02215 0.17 -1.9
448,101 - ABID97_RS02215 0.17 -2.4
448,101 - ABID97_RS02215 0.17 -4.0
448,101 - ABID97_RS02215 0.17 -1.9
448,101 - ABID97_RS02215 0.17 -1.1
448,101 - ABID97_RS02215 0.17 -1.4
448,101 - ABID97_RS02215 0.17 -2.8
448,109 + ABID97_RS02215 0.18 -2.3
448,109 + ABID97_RS02215 0.18 -1.8
448,110 - ABID97_RS02215 0.18 -2.4
448,879 + -0.6
448,879 + -0.4
448,879 + +1.0
448,879 + -0.7
448,879 + -0.2
448,879 + +0.1
448,880 - +0.8
448,880 - +0.7
448,880 - +0.5
448,880 - +1.4
448,880 - +0.6
448,888 + +0.1
448,888 + -0.6
448,888 + -0.6
448,889 - +2.0
448,889 - +1.0
448,889 - -0.6
449,056 + ABID97_RS02220 0.11 -0.3
449,056 + ABID97_RS02220 0.11 +0.9
449,056 + ABID97_RS02220 0.11 +0.4
449,057 - ABID97_RS02220 0.11 +0.8
449,057 - ABID97_RS02220 0.11 +1.0
449,057 - ABID97_RS02220 0.11 +1.2
449,167 + ABID97_RS02220 0.16 +0.5
449,167 + ABID97_RS02220 0.16 -0.2
449,168 - ABID97_RS02220 0.16 +0.2
449,227 + ABID97_RS02220 0.19 -0.2
449,227 + ABID97_RS02220 0.19 -0.2
449,227 + ABID97_RS02220 0.19 +0.0
449,227 + ABID97_RS02220 0.19 +0.0
449,227 + ABID97_RS02220 0.19 +0.1
449,228 - ABID97_RS02220 0.19 +1.6
449,228 - ABID97_RS02220 0.19 +0.2
449,228 - ABID97_RS02220 0.19 +0.1
449,228 - ABID97_RS02220 0.19 +0.2
449,228 - ABID97_RS02220 0.19 -0.3
449,443 + ABID97_RS02220 0.28 +0.7
449,443 + ABID97_RS02220 0.28 +0.0
449,443 + ABID97_RS02220 0.28 +0.1
449,443 + ABID97_RS02220 0.28 +0.5
449,443 + ABID97_RS02220 0.28 +0.2
449,443 + ABID97_RS02220 0.28 +0.6
449,443 + ABID97_RS02220 0.28 +0.1
449,443 + ABID97_RS02220 0.28 +0.2
449,443 + ABID97_RS02220 0.28 -0.1
449,443 + ABID97_RS02220 0.28 +0.1
449,444 - ABID97_RS02220 0.28 +0.9
449,444 - ABID97_RS02220 0.28 +0.4
449,444 - ABID97_RS02220 0.28 +0.8
449,444 - ABID97_RS02220 0.28 +0.3
449,444 - ABID97_RS02220 0.28 +0.7
449,659 + ABID97_RS02220 0.38 +0.4
449,659 + ABID97_RS02220 0.38 +0.1
449,659 + ABID97_RS02220 0.38 -0.1
449,659 + ABID97_RS02220 0.38 -0.3
449,659 + ABID97_RS02220 0.38 -0.0
449,659 + ABID97_RS02220 0.38 +0.8
449,659 + ABID97_RS02220 0.38 -0.5
449,659 + ABID97_RS02220 0.38 +0.0
449,659 + ABID97_RS02220 0.38 +0.1
449,659 + ABID97_RS02220 0.38 +0.3
449,659 + ABID97_RS02220 0.38 -0.0
449,659 + ABID97_RS02220 0.38 -0.2
449,659 + ABID97_RS02220 0.38 -0.1
449,660 - ABID97_RS02220 0.38 +0.3
449,660 - ABID97_RS02220 0.38 +0.3
449,660 - ABID97_RS02220 0.38 +0.6
449,660 - ABID97_RS02220 0.38 +0.1
449,660 - ABID97_RS02220 0.38 +0.5
449,660 - +2.0
449,660 - ABID97_RS02220 0.38 +1.0
449,660 - ABID97_RS02220 0.38 +0.4
449,660 - ABID97_RS02220 0.38 +0.0
449,660 - ABID97_RS02220 0.38 +1.1
449,710 + ABID97_RS02220 0.40 +0.1
449,710 + ABID97_RS02220 0.40 -0.0
449,711 - ABID97_RS02220 0.40 +0.4
449,711 - ABID97_RS02220 0.40 +0.1

Or see this region's nucleotide sequence