Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02040

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02035 and ABID97_RS02040 are separated by 252 nucleotidesABID97_RS02040 and ABID97_RS02045 are separated by 281 nucleotides ABID97_RS02035: ABID97_RS02035 - ferritin-like domain-containing protein, at 408,709 to 409,566 _RS02035 ABID97_RS02040: ABID97_RS02040 - glutathione peroxidase, at 409,819 to 410,331 _RS02040 ABID97_RS02045: ABID97_RS02045 - glutathione S-transferase N-terminal domain-containing protein, at 410,613 to 411,224 _RS02045 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1at 409.073 kb on + strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.082 kb on + strand, within ABID97_RS02035at 409.082 kb on + strand, within ABID97_RS02035at 409.083 kb on - strand, within ABID97_RS02035at 409.083 kb on - strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.308 kb on - strand, within ABID97_RS02035at 409.578 kb on + strandat 409.640 kb on + strandat 409.640 kb on + strandat 409.641 kb on - strandat 409.641 kb on - strandat 409.673 kb on - strandat 409.725 kb on + strandat 409.921 kb on + strand, within ABID97_RS02040at 409.922 kb on - strand, within ABID97_RS02040at 409.922 kb on - strand, within ABID97_RS02040at 409.971 kb on + strand, within ABID97_RS02040at 409.981 kb on + strand, within ABID97_RS02040at 409.981 kb on + strand, within ABID97_RS02040at 409.981 kb on + strand, within ABID97_RS02040at 409.982 kb on - strand, within ABID97_RS02040at 409.982 kb on - strand, within ABID97_RS02040at 410.011 kb on + strand, within ABID97_RS02040at 410.011 kb on + strand, within ABID97_RS02040at 410.011 kb on + strand, within ABID97_RS02040at 410.012 kb on - strand, within ABID97_RS02040at 410.012 kb on - strand, within ABID97_RS02040at 410.012 kb on - strand, within ABID97_RS02040at 410.012 kb on - strand, within ABID97_RS02040at 410.221 kb on + strand, within ABID97_RS02040at 410.221 kb on + strand, within ABID97_RS02040at 410.222 kb on - strand, within ABID97_RS02040at 410.222 kb on - strand, within ABID97_RS02040at 410.227 kb on + strand, within ABID97_RS02040at 410.227 kb on + strand, within ABID97_RS02040at 410.227 kb on + strand, within ABID97_RS02040at 410.227 kb on + strand, within ABID97_RS02040at 410.228 kb on - strand, within ABID97_RS02040at 410.228 kb on - strand, within ABID97_RS02040at 410.365 kb on + strandat 410.365 kb on + strandat 410.366 kb on - strandat 410.405 kb on - strandat 410.544 kb on + strandat 410.659 kb on + strandat 410.660 kb on - strandat 410.660 kb on - strandat 411.019 kb on + strand, within ABID97_RS02045at 411.019 kb on + strand, within ABID97_RS02045at 411.019 kb on + strand, within ABID97_RS02045at 411.020 kb on - strand, within ABID97_RS02045at 411.020 kb on - strand, within ABID97_RS02045at 411.148 kb on + strand, within ABID97_RS02045at 411.149 kb on - strand, within ABID97_RS02045at 411.193 kb on + strandat 411.193 kb on + strandat 411.193 kb on + strandat 411.193 kb on + strandat 411.193 kb on + strandat 411.193 kb on + strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.194 kb on - strandat 411.249 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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409,073 + ABID97_RS02035 0.42 -0.4
409,074 - ABID97_RS02035 0.43 -0.0
409,074 - ABID97_RS02035 0.43 -0.1
409,074 - ABID97_RS02035 0.43 -0.1
409,074 - ABID97_RS02035 0.43 -0.5
409,074 - ABID97_RS02035 0.43 +0.1
409,082 + ABID97_RS02035 0.43 -0.6
409,082 + ABID97_RS02035 0.43 +0.3
409,083 - ABID97_RS02035 0.44 -0.0
409,083 - ABID97_RS02035 0.44 +0.0
409,124 + ABID97_RS02035 0.48 +0.5
409,124 + ABID97_RS02035 0.48 -0.0
409,124 + ABID97_RS02035 0.48 +0.3
409,124 + ABID97_RS02035 0.48 -0.0
409,124 + ABID97_RS02035 0.48 +0.2
409,125 - ABID97_RS02035 0.48 -0.6
409,125 - ABID97_RS02035 0.48 -0.8
409,125 - ABID97_RS02035 0.48 +0.0
409,125 - ABID97_RS02035 0.48 -1.2
409,125 - ABID97_RS02035 0.48 -0.5
409,125 - ABID97_RS02035 0.48 +0.2
409,125 - ABID97_RS02035 0.48 -0.8
409,125 - ABID97_RS02035 0.48 -0.5
409,308 - ABID97_RS02035 0.70 -0.6
409,578 + -0.2
409,640 + +1.3
409,640 + -0.5
409,641 - +0.5
409,641 - +0.4
409,673 - -0.1
409,725 + +0.4
409,921 + ABID97_RS02040 0.20 +1.1
409,922 - ABID97_RS02040 0.20 +0.9
409,922 - ABID97_RS02040 0.20 +0.8
409,971 + ABID97_RS02040 0.30 +0.4
409,981 + ABID97_RS02040 0.32 -1.5
409,981 + ABID97_RS02040 0.32 -0.6
409,981 + ABID97_RS02040 0.32 +1.1
409,982 - ABID97_RS02040 0.32 +0.4
409,982 - ABID97_RS02040 0.32 +0.8
410,011 + ABID97_RS02040 0.37 +0.6
410,011 + ABID97_RS02040 0.37 -1.2
410,011 + ABID97_RS02040 0.37 +0.3
410,012 - ABID97_RS02040 0.38 +0.7
410,012 - ABID97_RS02040 0.38 +0.8
410,012 - ABID97_RS02040 0.38 +0.8
410,012 - ABID97_RS02040 0.38 +1.5
410,221 + ABID97_RS02040 0.78 +0.5
410,221 + ABID97_RS02040 0.78 +0.6
410,222 - ABID97_RS02040 0.79 +0.3
410,222 - ABID97_RS02040 0.79 +0.1
410,227 + ABID97_RS02040 0.80 +0.5
410,227 + ABID97_RS02040 0.80 +0.6
410,227 + ABID97_RS02040 0.80 +0.9
410,227 + ABID97_RS02040 0.80 +0.5
410,228 - ABID97_RS02040 0.80 -0.0
410,228 - ABID97_RS02040 0.80 +1.0
410,365 + -0.6
410,365 + -1.0
410,366 - -0.8
410,405 - -2.5
410,544 + +0.7
410,659 + -1.1
410,660 - -0.0
410,660 - +0.6
411,019 + ABID97_RS02045 0.66 +0.1
411,019 + ABID97_RS02045 0.66 -0.3
411,019 + ABID97_RS02045 0.66 -0.4
411,020 - ABID97_RS02045 0.67 -0.1
411,020 - ABID97_RS02045 0.67 -1.3
411,148 + ABID97_RS02045 0.87 -0.6
411,149 - ABID97_RS02045 0.88 +0.1
411,193 + -0.6
411,193 + +0.2
411,193 + -0.6
411,193 + +0.4
411,193 + -2.0
411,193 + -0.8
411,194 - +0.3
411,194 - -0.3
411,194 - -0.6
411,194 - +0.1
411,194 - -0.1
411,194 - -0.3
411,249 + +0.5

Or see this region's nucleotide sequence