Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00255 and ABID97_RS00260 are separated by 27 nucleotides ABID97_RS00260 and ABID97_RS00265 are separated by 41 nucleotides ABID97_RS00265 and ABID97_RS00270 are separated by 48 nucleotides
ABID97_RS00255: ABID97_RS00255 - type IV pilus twitching motility protein PilT, at 58,295 to 59,338
_RS00255
ABID97_RS00260: ABID97_RS00260 - PilT/PilU family type 4a pilus ATPase, at 59,366 to 60,502
_RS00260
ABID97_RS00265: ABID97_RS00265 - NAD(P)-dependent oxidoreductase, at 60,544 to 61,452
_RS00265
ABID97_RS00270: ABID97_RS00270 - BON domain-containing protein, at 61,501 to 62,259
_RS00270
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.482 kb on - strand, within ABID97_RS00255 at 58.636 kb on - strand, within ABID97_RS00255 at 58.730 kb on + strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260 at 60.531 kb on + strand at 60.531 kb on + strand at 60.531 kb on + strand at 60.531 kb on + strand at 60.568 kb on + strand at 60.568 kb on + strand at 60.568 kb on + strand at 60.568 kb on + strand at 60.568 kb on + strand at 60.569 kb on - strand at 60.670 kb on + strand, within ABID97_RS00265 at 60.670 kb on + strand, within ABID97_RS00265 at 60.671 kb on - strand, within ABID97_RS00265 at 60.671 kb on - strand, within ABID97_RS00265 at 60.671 kb on - strand, within ABID97_RS00265 at 60.671 kb on - strand, within ABID97_RS00265 at 61.279 kb on + strand, within ABID97_RS00265 at 61.279 kb on + strand, within ABID97_RS00265 at 61.384 kb on + strand at 61.384 kb on + strand at 61.384 kb on + strand at 61.384 kb on + strand at 61.385 kb on - strand at 61.385 kb on - strand at 61.385 kb on - strand at 61.450 kb on + strand at 61.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 58,448 + ABID97_RS00255 0.15 -0.3 58,448 + ABID97_RS00255 0.15 -0.8 58,448 + ABID97_RS00255 0.15 -0.2 58,448 + ABID97_RS00255 0.15 +0.3 58,449 - ABID97_RS00255 0.15 -0.8 58,449 - ABID97_RS00255 0.15 +0.1 58,449 - ABID97_RS00255 0.15 -0.1 58,449 - ABID97_RS00255 0.15 -0.8 58,481 + ABID97_RS00255 0.18 -0.2 58,481 + ABID97_RS00255 0.18 -0.1 58,481 + ABID97_RS00255 0.18 -0.1 58,482 - ABID97_RS00255 0.18 -0.1 58,636 - ABID97_RS00255 0.33 +0.4 58,730 + ABID97_RS00255 0.42 -0.5 58,731 - ABID97_RS00255 0.42 -0.3 58,731 - ABID97_RS00255 0.42 -0.7 58,731 - ABID97_RS00255 0.42 +0.1 58,731 - ABID97_RS00255 0.42 -0.3 58,731 - ABID97_RS00255 0.42 +0.1 59,201 + ABID97_RS00255 0.87 -0.7 59,201 + ABID97_RS00255 0.87 -1.1 59,201 + ABID97_RS00255 0.87 -0.3 59,201 + ABID97_RS00255 0.87 -1.2 59,201 + ABID97_RS00255 0.87 -0.1 59,202 - ABID97_RS00255 0.87 -0.7 59,202 - ABID97_RS00255 0.87 +1.2 59,202 - ABID97_RS00255 0.87 -0.7 59,202 - ABID97_RS00255 0.87 +0.0 59,202 - ABID97_RS00255 0.87 +0.8 59,202 - ABID97_RS00255 0.87 +0.7 59,202 - ABID97_RS00255 0.87 +0.1 59,985 + ABID97_RS00260 0.54 -2.0 59,985 + ABID97_RS00260 0.54 -1.7 59,985 + ABID97_RS00260 0.54 -1.0 59,985 + ABID97_RS00260 0.54 -0.9 59,985 + ABID97_RS00260 0.54 -1.4 59,985 + ABID97_RS00260 0.54 -1.6 59,986 - ABID97_RS00260 0.55 -3.3 59,986 - ABID97_RS00260 0.55 -1.7 59,986 - ABID97_RS00260 0.55 -0.5 59,986 - ABID97_RS00260 0.55 -0.8 60,531 + -0.0 60,531 + +3.0 60,531 + -0.6 60,531 + -0.3 60,568 + +0.2 60,568 + -0.0 60,568 + -0.8 60,568 + -0.4 60,568 + -1.5 60,569 - +0.2 60,670 + ABID97_RS00265 0.14 +0.2 60,670 + ABID97_RS00265 0.14 -0.3 60,671 - ABID97_RS00265 0.14 -0.7 60,671 - ABID97_RS00265 0.14 -0.6 60,671 - ABID97_RS00265 0.14 -0.0 60,671 - ABID97_RS00265 0.14 -0.3 61,279 + ABID97_RS00265 0.81 -0.5 61,279 + ABID97_RS00265 0.81 -0.8 61,384 + -0.3 61,384 + -0.2 61,384 + -0.8 61,384 + +0.9 61,385 - +0.0 61,385 - -1.5 61,385 - -0.3 61,450 + -0.9 61,451 - -0.3
Or see this region's nucleotide sequence