Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuU and secG are separated by 14 nucleotides secG and glmM are separated by 227 nucleotides glmM and folP overlap by 8 nucleotides folP and ftsH are separated by 89 nucleotides
b3174: leuU - tRNA-Leu (NCBI), at 3,320,094 to 3,320,180
leuU
b3175: secG - protein-export membrane protein (NCBI), at 3,320,195 to 3,320,527
secG
b3176: glmM - phosphoglucosamine mutase (NCBI), at 3,320,755 to 3,322,092
glmM
b3177: folP - 7,8-dihydropteroate synthase (VIMSS), at 3,322,085 to 3,322,933
folP
b3178: ftsH - protease, ATP-dependent zinc-metallo (NCBI), at 3,323,023 to 3,324,957
ftsH
Position (kb)
3320
3321
3322
3323 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3319.757 kb on - strand at 3319.772 kb on - strand at 3319.799 kb on - strand at 3319.814 kb on - strand at 3319.814 kb on - strand at 3319.814 kb on - strand at 3319.817 kb on - strand at 3319.824 kb on - strand at 3319.829 kb on - strand at 3319.830 kb on - strand at 3319.834 kb on - strand at 3319.836 kb on - strand at 3319.844 kb on - strand at 3319.844 kb on - strand at 3319.844 kb on - strand at 3319.844 kb on - strand at 3319.844 kb on - strand at 3319.844 kb on - strand at 3319.844 kb on - strand at 3319.846 kb on - strand at 3319.846 kb on - strand at 3319.846 kb on - strand at 3319.849 kb on - strand at 3319.849 kb on - strand at 3319.851 kb on - strand at 3319.851 kb on - strand at 3319.852 kb on - strand at 3319.854 kb on - strand at 3319.854 kb on - strand at 3319.859 kb on - strand at 3319.859 kb on - strand at 3319.864 kb on - strand at 3319.864 kb on - strand at 3319.864 kb on - strand at 3319.880 kb on - strand at 3319.880 kb on - strand at 3319.882 kb on + strand at 3319.891 kb on - strand at 3319.891 kb on - strand at 3319.905 kb on - strand at 3319.905 kb on - strand at 3319.905 kb on - strand at 3319.905 kb on - strand at 3319.905 kb on - strand at 3319.915 kb on - strand at 3319.917 kb on - strand at 3319.917 kb on - strand at 3319.917 kb on - strand at 3319.957 kb on + strand at 3319.959 kb on + strand at 3319.978 kb on - strand at 3319.984 kb on - strand at 3319.984 kb on - strand at 3319.985 kb on - strand at 3319.985 kb on - strand at 3319.997 kb on - strand at 3319.997 kb on - strand at 3319.997 kb on - strand at 3319.998 kb on - strand at 3319.998 kb on - strand at 3319.998 kb on - strand at 3320.003 kb on - strand at 3320.003 kb on - strand at 3320.008 kb on - strand at 3320.013 kb on + strand at 3320.013 kb on + strand at 3320.013 kb on + strand at 3320.013 kb on + strand at 3320.016 kb on - strand at 3320.016 kb on - strand at 3320.017 kb on + strand at 3320.018 kb on - strand at 3320.018 kb on - strand at 3320.018 kb on - strand at 3320.018 kb on - strand at 3320.018 kb on - strand at 3320.021 kb on - strand at 3320.023 kb on - strand at 3320.025 kb on - strand at 3320.025 kb on - strand at 3320.032 kb on - strand at 3320.032 kb on - strand at 3320.037 kb on + strand at 3320.037 kb on + strand at 3320.040 kb on - strand at 3320.040 kb on - strand at 3320.045 kb on - strand at 3320.045 kb on - strand at 3320.056 kb on - strand at 3320.056 kb on - strand at 3320.211 kb on - strand at 3320.619 kb on - strand at 3320.619 kb on - strand at 3320.772 kb on - strand at 3320.808 kb on - strand at 3322.094 kb on - strand at 3322.095 kb on - strand at 3322.096 kb on - strand at 3322.096 kb on - strand at 3322.115 kb on - strand at 3322.944 kb on - strand at 3322.944 kb on - strand at 3323.027 kb on - strand at 3323.048 kb on - strand at 3323.048 kb on - strand at 3323.059 kb on - strand at 3323.059 kb on - strand at 3323.059 kb on - strand at 3323.074 kb on - strand at 3323.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,319,757 - +0.2 3,319,772 - +0.0 3,319,799 - -0.7 3,319,814 - -0.2 3,319,814 - -0.0 3,319,814 - +0.3 3,319,817 - -0.4 3,319,824 - -0.0 3,319,829 - +0.2 3,319,830 - -0.2 3,319,834 - -0.6 3,319,836 - +0.4 3,319,844 - +1.3 3,319,844 - -0.9 3,319,844 - -0.9 3,319,844 - -0.9 3,319,844 - -0.1 3,319,844 - -0.7 3,319,844 - -0.3 3,319,846 - +0.4 3,319,846 - -0.3 3,319,846 - +0.3 3,319,849 - -1.5 3,319,849 - -0.0 3,319,851 - +0.2 3,319,851 - -0.3 3,319,852 - +0.0 3,319,854 - +0.4 3,319,854 - +0.8 3,319,859 - +1.1 3,319,859 - +0.9 3,319,864 - -0.2 3,319,864 - +0.6 3,319,864 - -0.1 3,319,880 - +0.2 3,319,880 - -1.4 3,319,882 + -0.7 3,319,891 - +0.6 3,319,891 - -0.1 3,319,905 - +0.3 3,319,905 - -0.2 3,319,905 - +0.5 3,319,905 - -0.4 3,319,905 - -0.1 3,319,915 - +1.3 3,319,917 - -0.4 3,319,917 - +1.4 3,319,917 - +0.1 3,319,957 + -3.1 3,319,959 + -1.0 3,319,978 - +0.7 3,319,984 - +0.8 3,319,984 - +0.4 3,319,985 - -0.5 3,319,985 - +0.1 3,319,997 - +0.5 3,319,997 - +1.0 3,319,997 - -0.1 3,319,998 - +0.6 3,319,998 - +1.0 3,319,998 - +0.7 3,320,003 - -0.3 3,320,003 - +0.2 3,320,008 - -0.5 3,320,013 + +0.1 3,320,013 + +0.2 3,320,013 + +0.5 3,320,013 + -0.4 3,320,016 - -0.2 3,320,016 - -0.8 3,320,017 + +1.7 3,320,018 - -0.3 3,320,018 - -1.1 3,320,018 - +0.2 3,320,018 - +0.6 3,320,018 - +0.5 3,320,021 - +0.4 3,320,023 - +1.1 3,320,025 - -0.7 3,320,025 - -0.0 3,320,032 - +0.4 3,320,032 - +0.1 3,320,037 + +0.9 3,320,037 + +1.1 3,320,040 - -0.4 3,320,040 - -1.4 3,320,045 - -0.4 3,320,045 - -0.9 3,320,056 - -0.3 3,320,056 - -0.5 3,320,211 - +0.1 3,320,619 - +0.0 3,320,619 - +0.2 3,320,772 - -0.0 3,320,808 - -2.2 3,322,094 - +0.7 3,322,095 - +1.0 3,322,096 - -0.4 3,322,096 - -0.8 3,322,115 - +0.2 3,322,944 - -0.5 3,322,944 - +0.8 3,323,027 - +0.2 3,323,048 - -0.1 3,323,048 - -0.6 3,323,059 - -1.6 3,323,059 - +2.0 3,323,059 - +0.7 3,323,074 - -0.2 3,323,092 - -0.1
Or see this region's nucleotide sequence