Strain Fitness in Escherichia coli BW25113 around b2152

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalS and yeiB are separated by 141 nucleotidesyeiB and folE are separated by 16 nucleotidesfolE and yeiG are separated by 257 nucleotides b2151: galS - DNA-binding transcriptional repressor (NCBI), at 2,238,650 to 2,239,690 galS b2152: yeiB - conserved inner membrane protein (NCBI), at 2,239,832 to 2,240,989 yeiB b2153: folE - GTP cyclohydrolase I (NCBI), at 2,241,006 to 2,241,674 folE b2154: yeiG - predicted esterase (NCBI), at 2,241,932 to 2,242,768 yeiG Position (kb) 2239 2240 2241Strain fitness (log2 ratio) -2 -1 0 1at 2238.839 kb on - strand, within galSat 2238.857 kb on - strand, within galSat 2239.012 kb on + strand, within galSat 2239.042 kb on - strand, within galSat 2239.066 kb on + strand, within galSat 2239.098 kb on - strand, within galSat 2239.098 kb on - strand, within galSat 2239.112 kb on - strand, within galSat 2239.267 kb on - strand, within galSat 2239.394 kb on + strand, within galSat 2239.429 kb on - strand, within galSat 2239.429 kb on - strand, within galSat 2239.452 kb on + strand, within galSat 2239.532 kb on + strand, within galSat 2239.590 kb on - strandat 2239.590 kb on - strandat 2239.605 kb on - strandat 2239.605 kb on - strandat 2239.699 kb on - strandat 2239.752 kb on - strandat 2239.937 kb on + strandat 2239.953 kb on + strand, within yeiBat 2240.119 kb on - strand, within yeiBat 2240.217 kb on + strand, within yeiBat 2240.262 kb on - strand, within yeiBat 2240.313 kb on - strand, within yeiBat 2240.566 kb on + strand, within yeiBat 2240.566 kb on + strand, within yeiBat 2240.778 kb on + strand, within yeiBat 2240.781 kb on + strand, within yeiBat 2240.781 kb on + strand, within yeiBat 2240.825 kb on - strand, within yeiBat 2240.882 kb on - strandat 2240.889 kb on + strandat 2240.889 kb on + strandat 2240.891 kb on - strandat 2241.735 kb on + strandat 2241.778 kb on - strandat 2241.778 kb on - strandat 2241.884 kb on - strandat 2241.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,238,839 - galS b2151 0.18 -2.4
2,238,857 - galS b2151 0.20 -0.7
2,239,012 + galS b2151 0.35 -1.2
2,239,042 - galS b2151 0.38 -0.3
2,239,066 + galS b2151 0.40 -1.7
2,239,098 - galS b2151 0.43 +0.5
2,239,098 - galS b2151 0.43 -2.5
2,239,112 - galS b2151 0.44 +0.2
2,239,267 - galS b2151 0.59 -1.3
2,239,394 + galS b2151 0.71 -1.3
2,239,429 - galS b2151 0.75 -0.8
2,239,429 - galS b2151 0.75 -0.0
2,239,452 + galS b2151 0.77 -2.7
2,239,532 + galS b2151 0.85 -1.6
2,239,590 - -1.0
2,239,590 - -2.6
2,239,605 - -1.8
2,239,605 - -1.2
2,239,699 - -0.0
2,239,752 - -0.4
2,239,937 + +0.6
2,239,953 + yeiB b2152 0.10 -0.9
2,240,119 - yeiB b2152 0.25 -0.1
2,240,217 + yeiB b2152 0.33 -0.7
2,240,262 - yeiB b2152 0.37 -0.3
2,240,313 - yeiB b2152 0.42 -0.2
2,240,566 + yeiB b2152 0.63 -0.2
2,240,566 + yeiB b2152 0.63 -1.8
2,240,778 + yeiB b2152 0.82 +0.5
2,240,781 + yeiB b2152 0.82 -2.1
2,240,781 + yeiB b2152 0.82 -0.5
2,240,825 - yeiB b2152 0.86 +0.6
2,240,882 - +0.1
2,240,889 + -0.5
2,240,889 + -0.1
2,240,891 - +0.0
2,241,735 + -0.0
2,241,778 - -1.1
2,241,778 - -1.2
2,241,884 - +0.2
2,241,884 - +1.2

Or see this region's nucleotide sequence