Strain Fitness in Escherichia coli BW25113 around b1802

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaV and yeaW are separated by 31 nucleotidesyeaW and yeaX are separated by 55 nucleotides b1801: yeaV - predicted transporter (NCBI), at 1,881,212 to 1,882,657 yeaV b1802: yeaW - predicted 2Fe-2S cluster-containing protein (NCBI), at 1,882,689 to 1,883,813 yeaW b1803: yeaX - predicted oxidoreductase (NCBI), at 1,883,869 to 1,884,834 yeaX Position (kb) 1882 1883 1884Strain fitness (log2 ratio) -1 0 1at 1881.715 kb on - strand, within yeaVat 1882.003 kb on + strand, within yeaVat 1882.003 kb on + strand, within yeaVat 1882.028 kb on - strand, within yeaVat 1882.190 kb on + strand, within yeaVat 1882.315 kb on + strand, within yeaVat 1882.315 kb on + strand, within yeaVat 1882.323 kb on - strand, within yeaVat 1882.323 kb on - strand, within yeaVat 1882.323 kb on - strand, within yeaVat 1882.324 kb on - strand, within yeaVat 1882.481 kb on + strand, within yeaVat 1882.635 kb on - strandat 1882.679 kb on + strandat 1882.679 kb on + strandat 1882.769 kb on + strandat 1883.061 kb on + strand, within yeaWat 1883.116 kb on - strand, within yeaWat 1883.116 kb on - strand, within yeaWat 1883.298 kb on - strand, within yeaWat 1883.298 kb on - strand, within yeaWat 1883.458 kb on - strand, within yeaWat 1883.503 kb on + strand, within yeaWat 1883.656 kb on - strand, within yeaWat 1883.723 kb on - strandat 1883.734 kb on - strandat 1884.004 kb on - strand, within yeaXat 1884.124 kb on - strand, within yeaXat 1884.124 kb on - strand, within yeaXat 1884.238 kb on - strand, within yeaXat 1884.238 kb on - strand, within yeaXat 1884.518 kb on + strand, within yeaXat 1884.518 kb on + strand, within yeaXat 1884.707 kb on + strand, within yeaX

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,881,715 - yeaV b1801 0.35 +0.2
1,882,003 + yeaV b1801 0.55 -0.4
1,882,003 + yeaV b1801 0.55 -0.5
1,882,028 - yeaV b1801 0.56 +0.1
1,882,190 + yeaV b1801 0.68 +1.0
1,882,315 + yeaV b1801 0.76 -0.3
1,882,315 + yeaV b1801 0.76 +0.4
1,882,323 - yeaV b1801 0.77 -0.0
1,882,323 - yeaV b1801 0.77 -0.7
1,882,323 - yeaV b1801 0.77 -0.4
1,882,324 - yeaV b1801 0.77 -0.3
1,882,481 + yeaV b1801 0.88 +0.3
1,882,635 - +0.2
1,882,679 + +1.5
1,882,679 + +0.9
1,882,769 + -0.2
1,883,061 + yeaW b1802 0.33 +0.5
1,883,116 - yeaW b1802 0.38 +0.2
1,883,116 - yeaW b1802 0.38 +0.4
1,883,298 - yeaW b1802 0.54 +0.5
1,883,298 - yeaW b1802 0.54 +0.1
1,883,458 - yeaW b1802 0.68 +0.1
1,883,503 + yeaW b1802 0.72 +0.2
1,883,656 - yeaW b1802 0.86 -0.2
1,883,723 - -0.4
1,883,734 - -0.3
1,884,004 - yeaX b1803 0.14 -0.2
1,884,124 - yeaX b1803 0.26 -1.0
1,884,124 - yeaX b1803 0.26 -0.1
1,884,238 - yeaX b1803 0.38 -0.9
1,884,238 - yeaX b1803 0.38 -0.1
1,884,518 + yeaX b1803 0.67 +0.3
1,884,518 + yeaX b1803 0.67 +0.6
1,884,707 + yeaX b1803 0.87 +0.4

Or see this region's nucleotide sequence