Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliF and yliG are separated by 46 nucleotides yliG and yliH are separated by 212 nucleotides yliH and yliI are separated by 110 nucleotides
b0834: yliF - predicted diguanylate cyclase (NCBI), at 874,558 to 875,886
yliF
b0835: yliG - predicted SAM-dependent methyltransferase (NCBI), at 875,933 to 877,258
yliG
b0836: yliH - hypothetical protein (NCBI), at 877,471 to 877,854
yliH
b0837: yliI - predicted dehydrogenase (NCBI), at 877,965 to 879,080
yliI
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -2
-1
0
1 at 874.937 kb on - strand, within yliF at 874.981 kb on + strand, within yliF at 874.985 kb on + strand, within yliF at 874.993 kb on - strand, within yliF at 874.994 kb on - strand, within yliF at 874.994 kb on - strand, within yliF at 874.994 kb on - strand, within yliF at 875.006 kb on + strand, within yliF at 875.029 kb on + strand, within yliF at 875.064 kb on + strand, within yliF at 875.070 kb on + strand, within yliF at 875.095 kb on + strand, within yliF at 875.101 kb on - strand, within yliF at 875.114 kb on - strand, within yliF at 875.198 kb on + strand, within yliF at 875.198 kb on + strand, within yliF at 875.278 kb on + strand, within yliF at 875.278 kb on + strand, within yliF at 875.286 kb on + strand, within yliF at 875.287 kb on + strand, within yliF at 875.292 kb on - strand, within yliF at 875.298 kb on + strand, within yliF at 875.299 kb on - strand, within yliF at 875.300 kb on + strand, within yliF at 875.303 kb on + strand, within yliF at 875.309 kb on + strand, within yliF at 875.320 kb on - strand, within yliF at 875.382 kb on - strand, within yliF at 875.426 kb on + strand, within yliF at 875.430 kb on + strand, within yliF at 875.443 kb on + strand, within yliF at 875.446 kb on + strand, within yliF at 875.451 kb on - strand, within yliF at 875.451 kb on - strand, within yliF at 875.451 kb on - strand, within yliF at 875.457 kb on + strand, within yliF at 875.465 kb on - strand, within yliF at 875.465 kb on - strand, within yliF at 875.495 kb on + strand, within yliF at 875.530 kb on + strand, within yliF at 875.566 kb on + strand, within yliF at 875.573 kb on + strand, within yliF at 875.593 kb on + strand, within yliF at 875.596 kb on - strand, within yliF at 875.643 kb on + strand, within yliF at 875.643 kb on + strand, within yliF at 875.643 kb on - strand, within yliF at 875.645 kb on + strand, within yliF at 875.651 kb on - strand, within yliF at 875.651 kb on - strand, within yliF at 875.651 kb on - strand, within yliF at 875.658 kb on + strand, within yliF at 875.658 kb on + strand, within yliF at 875.699 kb on + strand, within yliF at 875.701 kb on + strand, within yliF at 875.701 kb on + strand, within yliF at 875.701 kb on + strand, within yliF at 875.707 kb on - strand, within yliF at 875.717 kb on - strand, within yliF at 875.785 kb on - strand at 875.798 kb on + strand at 875.799 kb on - strand at 875.807 kb on - strand at 875.807 kb on - strand at 875.811 kb on - strand at 875.811 kb on - strand at 875.838 kb on + strand at 875.838 kb on + strand at 875.839 kb on + strand at 875.839 kb on + strand at 875.847 kb on - strand at 875.849 kb on - strand at 875.855 kb on - strand at 875.855 kb on - strand at 875.855 kb on - strand at 875.871 kb on + strand at 875.879 kb on - strand at 875.985 kb on - strand at 875.997 kb on - strand at 875.997 kb on - strand at 876.196 kb on - strand, within yliG at 876.369 kb on - strand, within yliG at 876.423 kb on - strand, within yliG at 876.439 kb on - strand, within yliG at 876.439 kb on - strand, within yliG at 876.546 kb on + strand, within yliG at 876.546 kb on + strand, within yliG at 876.551 kb on + strand, within yliG at 876.584 kb on - strand, within yliG at 876.629 kb on + strand, within yliG at 876.713 kb on + strand, within yliG at 876.716 kb on - strand, within yliG at 876.729 kb on + strand, within yliG at 876.729 kb on + strand, within yliG at 876.763 kb on - strand, within yliG at 876.766 kb on - strand, within yliG at 876.845 kb on - strand, within yliG at 876.877 kb on + strand, within yliG at 876.891 kb on - strand, within yliG at 876.891 kb on - strand, within yliG at 876.925 kb on + strand, within yliG at 876.945 kb on - strand, within yliG at 876.945 kb on - strand, within yliG at 876.969 kb on + strand, within yliG at 876.969 kb on + strand, within yliG at 877.009 kb on + strand, within yliG at 877.009 kb on + strand, within yliG at 877.078 kb on + strand, within yliG at 877.098 kb on - strand, within yliG at 877.138 kb on - strand at 877.141 kb on + strand at 877.395 kb on + strand at 877.451 kb on + strand at 877.515 kb on - strand, within yliH at 877.634 kb on + strand, within yliH at 877.762 kb on + strand, within yliH at 877.762 kb on + strand, within yliH at 877.799 kb on + strand, within yliH at 877.846 kb on - strand at 877.936 kb on + strand at 877.940 kb on + strand at 877.940 kb on + strand at 877.970 kb on - strand at 877.970 kb on - strand at 878.117 kb on - strand, within yliI at 878.117 kb on - strand, within yliI
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 874,937 - yliF b0834 0.29 +0.9 874,981 + yliF b0834 0.32 -0.1 874,985 + yliF b0834 0.32 -0.4 874,993 - yliF b0834 0.33 -0.2 874,994 - yliF b0834 0.33 +0.1 874,994 - yliF b0834 0.33 -1.3 874,994 - yliF b0834 0.33 -0.4 875,006 + yliF b0834 0.34 +0.0 875,029 + yliF b0834 0.35 +0.1 875,064 + yliF b0834 0.38 +0.5 875,070 + yliF b0834 0.39 +0.7 875,095 + yliF b0834 0.40 -0.4 875,101 - yliF b0834 0.41 -0.5 875,114 - yliF b0834 0.42 +0.6 875,198 + yliF b0834 0.48 -1.1 875,198 + yliF b0834 0.48 +0.1 875,278 + yliF b0834 0.54 -1.3 875,278 + yliF b0834 0.54 +0.1 875,286 + yliF b0834 0.55 +0.6 875,287 + yliF b0834 0.55 -1.6 875,292 - yliF b0834 0.55 -0.4 875,298 + yliF b0834 0.56 +1.0 875,299 - yliF b0834 0.56 -0.0 875,300 + yliF b0834 0.56 -1.2 875,303 + yliF b0834 0.56 +0.5 875,309 + yliF b0834 0.57 -0.7 875,320 - yliF b0834 0.57 -0.3 875,382 - yliF b0834 0.62 -0.6 875,426 + yliF b0834 0.65 +0.2 875,430 + yliF b0834 0.66 +0.8 875,443 + yliF b0834 0.67 +0.8 875,446 + yliF b0834 0.67 +0.1 875,451 - yliF b0834 0.67 +0.0 875,451 - yliF b0834 0.67 +0.4 875,451 - yliF b0834 0.67 +0.4 875,457 + yliF b0834 0.68 -1.4 875,465 - yliF b0834 0.68 -0.5 875,465 - yliF b0834 0.68 -0.8 875,495 + yliF b0834 0.71 +0.3 875,530 + yliF b0834 0.73 +0.3 875,566 + yliF b0834 0.76 +0.2 875,573 + yliF b0834 0.76 +0.2 875,593 + yliF b0834 0.78 +0.2 875,596 - yliF b0834 0.78 +0.4 875,643 + yliF b0834 0.82 -0.8 875,643 + yliF b0834 0.82 -1.0 875,643 - yliF b0834 0.82 +1.1 875,645 + yliF b0834 0.82 +0.6 875,651 - yliF b0834 0.82 -0.1 875,651 - yliF b0834 0.82 +1.0 875,651 - yliF b0834 0.82 -0.6 875,658 + yliF b0834 0.83 +0.1 875,658 + yliF b0834 0.83 -0.8 875,699 + yliF b0834 0.86 +1.0 875,701 + yliF b0834 0.86 +0.2 875,701 + yliF b0834 0.86 +0.1 875,701 + yliF b0834 0.86 -1.3 875,707 - yliF b0834 0.86 -0.8 875,717 - yliF b0834 0.87 +0.4 875,785 - -1.0 875,798 + +0.8 875,799 - +0.7 875,807 - -1.9 875,807 - -0.9 875,811 - -0.9 875,811 - +0.3 875,838 + -0.1 875,838 + +0.1 875,839 + -1.2 875,839 + -0.4 875,847 - -1.2 875,849 - -0.3 875,855 - +0.7 875,855 - -0.1 875,855 - +0.7 875,871 + -0.1 875,879 - -0.0 875,985 - +0.9 875,997 - -0.5 875,997 - -0.1 876,196 - yliG b0835 0.20 +0.6 876,369 - yliG b0835 0.33 +0.4 876,423 - yliG b0835 0.37 +1.1 876,439 - yliG b0835 0.38 +0.2 876,439 - yliG b0835 0.38 -0.4 876,546 + yliG b0835 0.46 +0.5 876,546 + yliG b0835 0.46 +1.5 876,551 + yliG b0835 0.47 -0.3 876,584 - yliG b0835 0.49 +1.6 876,629 + yliG b0835 0.52 +0.7 876,713 + yliG b0835 0.59 +0.8 876,716 - yliG b0835 0.59 +0.7 876,729 + yliG b0835 0.60 +1.3 876,729 + yliG b0835 0.60 +1.4 876,763 - yliG b0835 0.63 +1.1 876,766 - yliG b0835 0.63 +0.9 876,845 - yliG b0835 0.69 +0.7 876,877 + yliG b0835 0.71 -0.6 876,891 - yliG b0835 0.72 +0.7 876,891 - yliG b0835 0.72 -1.0 876,925 + yliG b0835 0.75 +0.3 876,945 - yliG b0835 0.76 +1.0 876,945 - yliG b0835 0.76 +0.6 876,969 + yliG b0835 0.78 -0.3 876,969 + yliG b0835 0.78 +0.5 877,009 + yliG b0835 0.81 +0.5 877,009 + yliG b0835 0.81 +1.0 877,078 + yliG b0835 0.86 +0.9 877,098 - yliG b0835 0.88 -0.6 877,138 - +0.5 877,141 + +0.3 877,395 + +0.5 877,451 + -0.1 877,515 - yliH b0836 0.11 -0.8 877,634 + yliH b0836 0.42 -0.0 877,762 + yliH b0836 0.76 +0.8 877,762 + yliH b0836 0.76 -0.3 877,799 + yliH b0836 0.85 +0.5 877,846 - -0.0 877,936 + +0.2 877,940 + -2.6 877,940 + +0.7 877,970 - -0.2 877,970 - -0.1 878,117 - yliI b0837 0.14 +0.1 878,117 - yliI b0837 0.14 +0.9
Or see this region's nucleotide sequence