Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_654

Experiment: Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_653 and PfGW456L13_654 are separated by 158 nucleotidesPfGW456L13_654 and PfGW456L13_655 are separated by 0 nucleotidesPfGW456L13_655 and PfGW456L13_656 are separated by 159 nucleotides PfGW456L13_653 - Trk system potassium uptake protein TrkA, at 743,740 to 745,116 _653 PfGW456L13_654 - Chaperone protein YscY (Yop proteins translocation protein Y), at 745,275 to 745,589 _654 PfGW456L13_655 - FIG00954045: hypothetical protein, at 745,590 to 745,829 _655 PfGW456L13_656 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 745,989 to 746,876 _656 Position (kb) 745 746Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 744.365 kb on + strand, within PfGW456L13_653at 744.365 kb on + strand, within PfGW456L13_653at 744.366 kb on - strand, within PfGW456L13_653at 744.433 kb on + strand, within PfGW456L13_653at 744.433 kb on + strand, within PfGW456L13_653at 744.433 kb on + strand, within PfGW456L13_653at 744.434 kb on - strand, within PfGW456L13_653at 744.434 kb on - strand, within PfGW456L13_653at 744.435 kb on + strand, within PfGW456L13_653at 744.436 kb on - strand, within PfGW456L13_653at 744.534 kb on - strand, within PfGW456L13_653at 744.534 kb on - strand, within PfGW456L13_653at 744.672 kb on + strand, within PfGW456L13_653at 744.742 kb on + strand, within PfGW456L13_653at 744.742 kb on + strand, within PfGW456L13_653at 744.742 kb on + strand, within PfGW456L13_653at 744.742 kb on + strand, within PfGW456L13_653at 744.743 kb on - strand, within PfGW456L13_653at 744.743 kb on - strand, within PfGW456L13_653at 744.978 kb on + strand, within PfGW456L13_653at 745.068 kb on + strandat 745.068 kb on + strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.080 kb on - strandat 745.132 kb on + strandat 745.135 kb on + strandat 745.170 kb on + strandat 745.170 kb on + strandat 745.230 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.235 kb on + strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.236 kb on - strandat 745.350 kb on + strand, within PfGW456L13_654at 745.351 kb on - strand, within PfGW456L13_654at 745.351 kb on - strand, within PfGW456L13_654at 745.419 kb on + strand, within PfGW456L13_654at 745.420 kb on - strand, within PfGW456L13_654at 745.438 kb on + strand, within PfGW456L13_654at 745.597 kb on + strandat 745.598 kb on - strandat 745.665 kb on + strand, within PfGW456L13_655at 745.665 kb on + strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.666 kb on - strand, within PfGW456L13_655at 745.685 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.733 kb on - strand, within PfGW456L13_655at 745.859 kb on + strandat 745.859 kb on + strandat 745.860 kb on - strandat 745.993 kb on + strandat 746.047 kb on + strandat 746.047 kb on + strandat 746.048 kb on - strandat 746.048 kb on - strandat 746.072 kb on - strandat 746.125 kb on + strand, within PfGW456L13_656at 746.125 kb on + strand, within PfGW456L13_656at 746.125 kb on + strand, within PfGW456L13_656at 746.126 kb on - strand, within PfGW456L13_656at 746.126 kb on - strand, within PfGW456L13_656at 746.486 kb on - strand, within PfGW456L13_656at 746.486 kb on - strand, within PfGW456L13_656

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.002 mg/ml
remove
744,365 + PfGW456L13_653 0.45 -0.7
744,365 + PfGW456L13_653 0.45 -0.4
744,366 - PfGW456L13_653 0.45 -0.9
744,433 + PfGW456L13_653 0.50 +0.5
744,433 + PfGW456L13_653 0.50 +0.5
744,433 + PfGW456L13_653 0.50 +0.3
744,434 - PfGW456L13_653 0.50 -1.0
744,434 - PfGW456L13_653 0.50 -1.2
744,435 + PfGW456L13_653 0.50 -1.3
744,436 - PfGW456L13_653 0.51 -0.7
744,534 - PfGW456L13_653 0.58 -2.1
744,534 - PfGW456L13_653 0.58 -1.1
744,672 + PfGW456L13_653 0.68 +1.0
744,742 + PfGW456L13_653 0.73 +0.2
744,742 + PfGW456L13_653 0.73 +0.7
744,742 + PfGW456L13_653 0.73 -0.4
744,742 + PfGW456L13_653 0.73 -2.1
744,743 - PfGW456L13_653 0.73 -2.9
744,743 - PfGW456L13_653 0.73 -1.5
744,978 + PfGW456L13_653 0.90 +0.7
745,068 + +1.3
745,068 + -0.6
745,080 - -3.5
745,080 - -2.4
745,080 - -1.4
745,080 - -1.5
745,080 - -1.4
745,132 + -0.8
745,135 + +0.3
745,170 + +0.7
745,170 + +1.1
745,230 + +1.1
745,235 + -0.2
745,235 + +0.3
745,235 + +0.5
745,235 + -0.5
745,235 + +0.3
745,235 + +0.2
745,236 - -1.0
745,236 - -3.3
745,236 - -3.0
745,236 - -1.3
745,236 - -1.2
745,236 - -3.8
745,350 + PfGW456L13_654 0.24 -3.0
745,351 - PfGW456L13_654 0.24 -2.0
745,351 - PfGW456L13_654 0.24 -4.0
745,419 + PfGW456L13_654 0.46 -0.5
745,420 - PfGW456L13_654 0.46 -3.2
745,438 + PfGW456L13_654 0.52 -4.0
745,597 + -1.5
745,598 - +0.5
745,665 + PfGW456L13_655 0.31 +0.7
745,665 + PfGW456L13_655 0.31 -0.6
745,666 - PfGW456L13_655 0.32 -1.0
745,666 - PfGW456L13_655 0.32 -1.3
745,666 - PfGW456L13_655 0.32 -0.4
745,685 - PfGW456L13_655 0.40 +0.3
745,733 - PfGW456L13_655 0.60 -0.1
745,733 - PfGW456L13_655 0.60 -0.3
745,733 - PfGW456L13_655 0.60 -1.2
745,733 - PfGW456L13_655 0.60 +0.5
745,733 - PfGW456L13_655 0.60 +0.4
745,859 + +0.0
745,859 + -0.8
745,860 - +0.2
745,993 + +0.6
746,047 + +0.5
746,047 + -2.3
746,048 - -2.3
746,048 - -2.0
746,072 - -1.0
746,125 + PfGW456L13_656 0.15 -2.1
746,125 + PfGW456L13_656 0.15 +0.0
746,125 + PfGW456L13_656 0.15 -0.9
746,126 - PfGW456L13_656 0.15 -2.0
746,126 - PfGW456L13_656 0.15 -1.2
746,486 - PfGW456L13_656 0.56 -1.3
746,486 - PfGW456L13_656 0.56 -0.8

Or see this region's nucleotide sequence